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Comment: C: VCF file phasing by SHAPEIT
4.5 years ago by miaowzai ▴ 390
1
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5.9k
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Answer: A: Error while downloading data from database[EGA]
5.2 years ago by miaowzai ▴ 390
1
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1
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15k
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Comment: C: Error in while (change > conv) { : missing value where TRUE/FALSE needed
5.4 years ago by miaowzai ▴ 390
10
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6
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10k
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how to switch REF and ALT alleles in VCF files if the REF is incorrect according to RefSeq?
VCF REF allele ALT allele PLINK
updated 5.4 years ago by ★ 9.6k • written 7.6 years ago by ▴ 390
1
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1
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7.2k
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Answer: C: VCF file phasing by SHAPEIT
5.6 years ago by miaowzai ▴ 390
2
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1
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5.5k
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Answer: A: BaseQRankSum and FS
6.0 years ago by miaowzai ▴ 390
0
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1
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3.6k
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Comment: C: ComBat correction with one batch containing only one sample - keep or remove?
6.1 years ago by miaowzai ▴ 390
0
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905
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Strange order of multi-allelic site in VCF file
VCF
6.1 years ago by miaowzai ▴ 390
0
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5.9k
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Comment: C: Error while downloading data from database[EGA]
6.4 years ago by miaowzai ▴ 390
0
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0
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3.5k
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Comment: C: relationship between DP and variant call quality
6.4 years ago by miaowzai ▴ 390
2
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12
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3.5k
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relationship between DP and variant call quality
coverage read depth DP variant quality
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 390
0
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0
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3.5k
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Comment: C: relationship between DP and variant call quality
6.4 years ago by miaowzai ▴ 390
0
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0
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3.5k
views
Comment: C: relationship between DP and variant call quality
6.4 years ago by miaowzai ▴ 390
0
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1
reply
3.5k
views
Comment: C: relationship between DP and variant call quality
6.4 years ago by miaowzai ▴ 390
0
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1
reply
3.5k
views
Comment: C: relationship between DP and variant call quality
6.4 years ago by miaowzai ▴ 390
0
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1
reply
3.5k
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Comment: C: relationship between DP and variant call quality
6.4 years ago by miaowzai ▴ 390
1
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0
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3.7k
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Answer: C: strand information for SNPs from VCF file (convert into IMPUTE format)
6.6 years ago by miaowzai ▴ 390
0
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0
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2.5k
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Comment: C: Illumina exome beadchip duplicated positions
6.6 years ago by miaowzai ▴ 390
3
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2
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2.5k
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Illumina exome beadchip duplicated positions
SNP exome illumina beadchip
6.6 years ago by miaowzai ▴ 390
0
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0
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13k
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Comment: C: Error running smartpca from eigensoft
6.6 years ago by miaowzai ▴ 390
1
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0
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13k
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Answer: A: Error running smartpca from eigensoft
6.7 years ago by miaowzai ▴ 390
0
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1
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13k
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Comment: C: Error running smartpca from eigensoft
6.7 years ago by miaowzai ▴ 390
0
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0
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13k
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Comment: C: Error running smartpca from eigensoft
6.7 years ago by miaowzai ▴ 390
21
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0
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193k
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Answer: A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
6.8 years ago by miaowzai ▴ 390
0
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0
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1.5k
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strand info of array chips
microarray strand ChIP-Seq
7.3 years ago by miaowzai ▴ 390
0
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1
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5.3k
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Comment: C: what is 0 in the plink .bim file under allele1/2 column?
7.3 years ago by miaowzai ▴ 390
4
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3
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5.3k
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what is 0 in the plink .bim file under allele1/2 column?
plink allele microarray array chip
updated 7.3 years ago by 11k • written 7.3 years ago by ▴ 390
0
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0
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3.0k
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Comment: C: subseting VCF by bcftools
7.3 years ago by miaowzai ▴ 390
0
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0
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3.4k
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Comment: C: how to find strand information for a list of SNPs?
7.3 years ago by miaowzai ▴ 390
4
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5
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3.4k
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how to find strand information for a list of SNPs?
strand microarray SNP imputation
updated 7.3 years ago by 24k • written 7.3 years ago by ▴ 390
1
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2
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3.0k
views
subseting VCF by bcftools
bcftools VCF
updated 7.3 years ago by ★ 1.0k • written 7.3 years ago by ▴ 390
1
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0
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2.8k
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Answer: A: Filter vcf file
7.3 years ago by miaowzai ▴ 390
1
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0
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3.4k
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Comment: C: how to find strand information for a list of SNPs?
7.3 years ago by miaowzai ▴ 390
2
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2
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3.7k
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strand information for SNPs from VCF file (convert into IMPUTE format)
VCF impute plink format strand
7.3 years ago by miaowzai ▴ 390
0
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0
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9.3k
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Comment: C: Reading a .ped file in R?
7.5 years ago by miaowzai ▴ 390
1
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1
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10k
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Comment: C: how to switch REF and ALT alleles in VCF files if the REF is incorrect according
7.6 years ago by miaowzai ▴ 390
0
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1
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2.3k
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how to correct chromosome number and variant position in a VCF file by the rs#?
rsID VCF
updated 20 months ago by 44k • written 7.6 years ago by ▴ 390
1
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2
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2.8k
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Is "Ectopic Expression" too much or too little expression of a gene?
gene-expression mouse devevlopment hox-genes
8.0 years ago by miaowzai ▴ 390
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