Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
5
replies
1.1k
views
Neither pysam nor samtools reading HTTPS-sourced BAM file correctly
bam pysam samtools
updated 7 months ago by 100k • written 7 months ago by 35k
0
votes
0
replies
3.8k
views
Comment: Comment: Reproduce the article "The complete sequence of a human genome."
7 months ago by Alex Reynolds 35k
5
votes
2
replies
3.8k
views
Answer: Answer: Reproduce the article "The complete sequence of a human genome."
7 months ago by Alex Reynolds 35k
0
votes
0
replies
1.6k
views
Comment: Comment: bedops alternative for bedtools -unionbedg ?
7 months ago by Alex Reynolds 35k
3
votes
2
replies
1.6k
views
Answer: Answer: bedops alternative for bedtools -unionbedg ?
7 months ago by Alex Reynolds 35k
0
votes
1
reply
1.4k
views
Answer: Answer: Is Bioinformatics a Professional Degree?
7 months ago by Alex Reynolds 35k
0
votes
0
replies
859
views
Answer: Answer: Scanning a genomic region for TFBS
8 months ago by Alex Reynolds 35k
0
votes
0
replies
597
views
Answer: Answer: Identify binding motifs within large super enhancer region
9 months ago by Alex Reynolds 35k
1
vote
0
replies
1.6k
views
Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
10 months ago by Alex Reynolds 35k
5
votes
0
replies
1.6k
views
Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
10 months ago by Alex Reynolds 35k
0
votes
0
replies
893
views
Answer: Answer: BED files
10 months ago by Alex Reynolds 35k
0
votes
0
replies
3.3k
views
Comment: Comment: Decoding MM and ML tags in .SAM file
10 months ago by Alex Reynolds 35k
1
vote
1
reply
675
views
Answer: Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
10 months ago by Alex Reynolds 35k
0
votes
0
replies
360
views
LAD/TAD and recombination hotspot data
hotspot recombination lad tad
11 months ago by Alex Reynolds 35k
1
vote
2
replies
3.3k
views
Answer: Answer: Decoding MM and ML tags in .SAM file
9 months ago by Alex Reynolds 35k
3
votes
4
replies
875
views
Fast BAM header editing
bam
updated 11 months ago by ★ 3.8k • written 11 months ago by 35k
0
votes
0
replies
875
views
Comment: Comment: Fast BAM header editing
11 months ago by Alex Reynolds 35k
0
votes
1
reply
1.6k
views
Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
11 months ago by Alex Reynolds 35k
1
vote
1
reply
1.6k
views
Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
11 months ago by Alex Reynolds 35k
1
vote
1
reply
1.6k
views
Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
11 months ago by Alex Reynolds 35k
0
votes
1
reply
633
views
Answer: Answer: Does it possible to know what are the adjacent genes up to 1000bp upstream and
13 months ago by Alex Reynolds 35k
0
votes
1
reply
2.1k
views
Comment: Comment: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
1
vote
1
reply
2.1k
views
Comment: Comment: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
0
votes
2
replies
2.1k
views
Comment: Comment: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
2
votes
0
replies
2.1k
views
Answer: Answer: gtf2bed not converting to bed
13 months ago by Alex Reynolds 35k
1
vote
0
replies
588
views
Answer: Answer: How do you get functional/biological role of motifs?
15 months ago by Alex Reynolds 35k
0
votes
0
replies
961
views
Comment: Comment: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by Alex Reynolds 35k
0
votes
0
replies
961
views
Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by Alex Reynolds 35k
0
votes
1
reply
961
views
Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
16 months ago by Alex Reynolds 35k
2
votes
1
reply
915
views
Answer: Answer: How can I use nohup command when filtering SNPs?
16 months ago by Alex Reynolds 35k
1
vote
0
replies
1.2k
views
Answer: Answer: Bedtools merge but only if intersection exists
17 months ago by Alex Reynolds 35k
0
votes
0
replies
524
views
Comment: Comment: trackBrowser: Visualization of sequencing data within a given genome region
17 months ago by Alex Reynolds 35k
0
votes
0
replies
9.2k
views
Comment: Comment: Laptops for bioinformatics
18 months ago by Alex Reynolds 35k
1
vote
1
reply
1.7k
views
Comment: Comment: How to find overlapping regions in a single bed file
19 months ago by Alex Reynolds 35k
1
vote
1
reply
1.7k
views
Answer: Answer: How to find overlapping regions in a single bed file
19 months ago by Alex Reynolds 35k
0
votes
0
replies
863
views
Comment: Comment: Unable to install bedops and bedtools on windows 11
20 months ago by Alex Reynolds 35k
0
votes
0
replies
1.7k
views
Comment: Comment: Count regions that overlap with python
21 months ago by Alex Reynolds 35k
0
votes
0
replies
1.7k
views
Comment: Comment: Count regions that overlap with python
21 months ago by Alex Reynolds 35k
0
votes
1
reply
1.7k
views
Answer: Answer: Count regions that overlap with python
21 months ago by Alex Reynolds 35k
2
votes
0
replies
2.3k
views
Answer: Answer: Best formats for storing large amounts of data for random access
21 months ago by Alex Reynolds 35k
0
votes
0
replies
473
views
Answer: Answer: Visualization of trascription factor family grouped by biological function
21 months ago by Alex Reynolds 35k
1
vote
0
replies
57k
views
Comment: Comment: How Can I Know The Length Of Mapped Reads From Bam File?
21 months ago by Alex Reynolds 35k
1
vote
0
replies
2.7k
views
Answer: Answer: GFF to BED conversion
22 months ago by Alex Reynolds 35k
2
votes
1
reply
1.2k
views
Answer: Answer: Mapping chromosome location to gene ID
22 months ago by Alex Reynolds 35k
0
votes
0
replies
815
views
Answer: Answer: Comparing bed files for shifts and enlargements
22 months ago by Alex Reynolds 35k
1
vote
0
replies
1.8k
views
Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
22 months ago by Alex Reynolds 35k
0
votes
0
replies
1.4k
views
Answer: Answer: How to create bed file from list of variants with indels and bp values
23 months ago by Alex Reynolds 35k
0
votes
1
reply
1.8k
views
Comment: Comment: sliding windows over genome
23 months ago by Alex Reynolds 35k
1
vote
0
replies
1.5k
views
Comment: Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
23 months ago by Alex Reynolds 35k
0
votes
1
reply
1.8k
views
Answer: Answer: sliding windows over genome
23 months ago by Alex Reynolds 35k
2,872 results • Page 2 of 58
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6