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5
votes
1
reply
27k
views
Answer:
C: MACS2 Broad peaks output BED format
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
dally
▴ 210
0
votes
1
reply
4.8k
views
Comment:
C: align_and_estimate_abundance.pl ERROR/ QUESTION
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
dally
▴ 210
0
votes
0
replies
9.0k
views
Answer:
A: heatmap for a predetermined order of rows
updated 5.0 years ago by
Ram
44k • written 8.9 years ago by
dally
▴ 210
0
votes
1
reply
26k
views
Answer:
A: Kmer Content in FastQC failed
updated 5.0 years ago by
Ram
44k • written 8.9 years ago by
dally
▴ 210
0
votes
1
reply
2.9k
views
Comment:
C: How to identify a certain pattern for histone marks
updated 5.0 years ago by
Ram
44k • written 9.0 years ago by
dally
▴ 210
0
votes
0
replies
2.9k
views
Comment:
C: How to identify a certain pattern for histone marks
updated 5.0 years ago by
Ram
44k • written 9.0 years ago by
dally
▴ 210
0
votes
1
reply
5.3k
views
Comment:
C: Remove overlapping features from a gtf file?
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
0
votes
1
reply
2.8k
views
Comment:
C: Building a pipeline
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
0
votes
1
reply
8.5k
views
Comment:
C: Bedtools Intersect Error
updated 5.1 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
0
votes
1
reply
2.6k
views
Comment:
C: Python Script Help for Cooccupancy
updated 5.1 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
0
votes
1
reply
2.6k
views
Comment:
C: Python Script Help for Cooccupancy
updated 5.1 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
0
votes
1
reply
4.2k
views
Comment:
C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
updated 5.1 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
0
votes
0
replies
5.2k
views
Comment:
C: How to find duplicate values in two columns and move them to a third?
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
0
votes
2
replies
5.2k
views
Comment:
C: How to find duplicate values in two columns and move them to a third?
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
0
votes
1
reply
5.2k
views
Comment:
C: How to find duplicate values in two columns and move them to a third?
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
0
votes
1
reply
12k
views
Comment:
C: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
0
votes
1
reply
12k
views
Comment:
A: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
0
votes
0
replies
12k
views
Comment:
C: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
0
votes
1
reply
12k
views
Comment:
C: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
0
votes
1
reply
12k
views
Comment:
C: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
dally
▴ 210
7
votes
13
replies
12k
views
Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
R
ChIP-Seq
ChIPseeker
updated 7.4 years ago by
zhangly811
▴ 50 • written 9.2 years ago by
dally
▴ 210
0
votes
0
replies
5.1k
views
Comment:
C: a problem with peak annotation after ChIP-seq
8.2 years ago by
dally
▴ 210
0
votes
1
reply
3.2k
views
Comment:
C: How to get native bash in Windows 10
8.3 years ago by
dally
▴ 210
0
votes
1
reply
8.5k
views
Comment:
C: SRAtoolkit error during fastq-dump
8.8 years ago by
dally
▴ 210
0
votes
0
replies
8.5k
views
Comment:
C: SRAtoolkit error during fastq-dump
8.8 years ago by
dally
▴ 210
6
votes
8
replies
8.5k
views
SRAtoolkit error during fastq-dump
sratoolkit
fastq-dump
software error
ChIP-Seq
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
dally
▴ 210
0
votes
1
reply
8.5k
views
Comment:
C: SRAtoolkit error during fastq-dump
8.8 years ago by
dally
▴ 210
0
votes
1
reply
3.3k
views
Comment:
C: Discovering motifs for core promoter elements on a set of enhancer sites
8.8 years ago by
dally
▴ 210
0
votes
1
reply
3.3k
views
Comment:
C: Discovering motifs for core promoter elements on a set of enhancer sites
8.8 years ago by
dally
▴ 210
0
votes
0
replies
3.3k
views
Comment:
C: Discovering motifs for core promoter elements on a set of enhancer sites
8.8 years ago by
dally
▴ 210
0
votes
1
reply
3.3k
views
Comment:
Comment: Discovering motifs for core promoter elements on a set of enhancer sites
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
dally
▴ 210
3
votes
11
replies
3.3k
views
Discovering motifs for core promoter elements on a set of enhancer sites
meme
chip-seq
motif-analysis
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
dally
▴ 210
3
votes
0
replies
23k
views
Answer:
Answer: Bed to BedGraph
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
dally
▴ 210
4
votes
1
reply
2.1k
views
Should I merge my two datasets together or something else?
datasets
enhancers
updated 20 months ago by
Ram
44k • written 8.9 years ago by
dally
▴ 210
1
vote
2
replies
3.9k
views
Answer:
A: MeDIP-seq and hMeDIP-seq analysis
8.9 years ago by
dally
▴ 210
4
votes
1
reply
3.2k
views
Individual colors for heatmaps using ngsplot
ngsplot
ChIP-Seq
updated 2.4 years ago by
Ram
44k • written 8.9 years ago by
dally
▴ 210
0
votes
1
reply
4.2k
views
Comment:
C: bedtools coverageBed: not sorted output
8.9 years ago by
dally
▴ 210
0
votes
1
reply
4.2k
views
Comment:
C: bedtools coverageBed: not sorted output
8.9 years ago by
dally
▴ 210
0
votes
1
reply
4.2k
views
Comment:
C: bedtools coverageBed: not sorted output
8.9 years ago by
dally
▴ 210
0
votes
0
replies
2.5k
views
Comment:
C: How to determine quantitative differences of histone enrichment in enhancer regi
8.9 years ago by
dally
▴ 210
2
votes
5
replies
2.5k
views
How to determine quantitative differences of histone enrichment in enhancer regions
R
enhancers
ChIP-Seq
updated 2.4 years ago by
Ram
44k • written 8.9 years ago by
dally
▴ 210
0
votes
1
reply
2.5k
views
Comment:
C: How to determine quantitative differences of histone enrichment in enhancer regi
8.9 years ago by
dally
▴ 210
0
votes
0
replies
4.8k
views
Comment:
C: align_and_estimate_abundance.pl ERROR/ QUESTION
8.9 years ago by
dally
▴ 210
0
votes
1
reply
4.8k
views
Answer:
A: align_and_estimate_abundance.pl ERROR/ QUESTION
8.9 years ago by
dally
▴ 210
0
votes
0
replies
1.5k
views
Comment:
C: R 3.2.3 is out
8.9 years ago by
dally
▴ 210
0
votes
0
replies
1.2k
views
groHMM input data
R
groHMM
8.9 years ago by
dally
▴ 210
6
votes
8
replies
2.9k
views
How to identify a certain pattern for histone marks
IGV
bedops
ChIP-Seq
bedtools
updated 2.4 years ago by
Ram
44k • written 9.0 years ago by
dally
▴ 210
5
votes
1
reply
5.9k
views
Generating Gencode TSS file
gencode
tss
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
1
vote
3
replies
3.4k
views
Predicting Enhancer Sites
enhancers
bedtools
updated 2.4 years ago by
Ram
44k • written 9.1 years ago by
dally
▴ 210
0
votes
1
reply
3.4k
views
Comment:
C: Predicting Enhancer Sites
9.1 years ago by
dally
▴ 210
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