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0
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0
replies
688
views
Answer:
Answer: Detecting NUMTS (nuclear mitochondrial sequences) in the whole genome sequenced
2.7 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
4.2k
views
Comment:
Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite
2.7 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.8k
views
Comment:
Comment: Issue with samtools reheader, bam file
2.8 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.2k
views
Answer:
Answer: Many TLENs in a SAM file seem much too big
2.8 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
842
views
Comment:
Comment: adding a contig fasta to reference genome fasta
2.8 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.8k
views
Comment:
Comment: Issue with samtools reheader, bam file
2.8 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.8k
views
Answer:
Answer: Issue with samtools reheader, bam file
2.8 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
3.1k
views
Comment:
Comment: BAM File, Change chromosome notation
2.8 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
3.1k
views
Answer:
Answer: BAM File, Change chromosome notation
2.8 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
5.3k
views
Comment:
Comment: BWA MEM Definition of a Primary Alignment
2.9 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
10.0k
views
Comment:
Comment: samtools multithreads
3.1 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.1k
views
Answer:
A: Soft Clipped read 3' end position
3.4 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.2k
views
Answer:
A: bwa aln writing speed became very slow after being very fast. What is the patter
3.5 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.1k
views
Answer:
A: Tools to call Large indels/structural variations in whole genome BAM data of mo
3.5 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.8k
views
Comment:
C: Revert bam to fastq
3.6 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.1k
views
Comment:
A: what the mean of Genomic content
3.6 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
806
views
Answer:
A: Is it possible to compute the Loss of heterocigosity from the Copy number variat
3.6 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.5k
views
Answer:
A: WES or WGS
3.6 years ago by
d-cameron
★ 2.9k
2
votes
1
reply
1.1k
views
Answer:
A: Structural Variation data of ICGC/PCAWG: 2,658 cancers across 38 tumour types
3.6 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.7k
views
Answer:
A: How to Update/Edit INFO field of VCF
updated 3.6 years ago by
Ram
43k • written 3.6 years ago by
d-cameron
★ 2.9k
2
votes
1
reply
2.8k
views
Answer:
A: Is there a hybrid aligner that uses both long and short reads to align to a refe
3.7 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
662
views
Are bwa alt contigs controlled purely by idxbase.alt?
bwa
3.7 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.0k
views
Answer:
A: diffrent between CNV and pcr duplicate
3.7 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
969
views
Comment:
C: HPV EBV typing from cancer genome data
3.7 years ago by
d-cameron
★ 2.9k
3
votes
0
replies
12k
views
Answer:
A: How to interpret variant allele frequency?
3.7 years ago by
d-cameron
★ 2.9k
2
votes
1
reply
969
views
Answer:
A: HPV EBV typing from cancer genome data
3.7 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.1k
views
Comment:
C: how to output the best alignment rather than multiple alignments for each read i
4.0 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.6k
views
Comment:
C: Why Samtools view don't extract sequence out of the given region?
4.0 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
979
views
Answer:
A: Is structure variations detected in DNA panel sequencing should also be detected
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.4k
views
Answer:
A: The center in scatter plot generated by CNVkit looks off
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.4k
views
Comment:
C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
842
views
Answer:
A: [IGV] Is it an aneuploidy ?
4.1 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.4k
views
Comment:
C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.2k
views
Answer:
A: Split bam into chunks but keep reads mapped to the same region together
4.1 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.4k
views
Comment:
C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.5k
views
Answer:
A: What's the best way to serve VCF data on web?
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
943
views
Comment:
C: Extract SV indicating pair-end reads
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
943
views
Comment:
C: Extract SV indicating pair-end reads
4.1 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
943
views
Answer:
A: Extract SV indicating pair-end reads
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.2k
views
Comment:
C: fusion detection for DNA Sequencing data
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.2k
views
Answer:
A: fusion detection for DNA Sequencing data
4.1 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
6.0k
views
Comment:
C: bwa mem memory allocation, threads and nodes
4.2 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
6.0k
views
Answer:
A: bwa mem memory allocation, threads and nodes
4.2 years ago by
d-cameron
★ 2.9k
3
votes
1
reply
1.5k
views
Answer:
A: Approach to structural variation analysis - case vs control
4.5 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.3k
views
Answer:
A: value of TLEN not conforming to the SAM specifications
4.6 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.7k
views
Comment:
C: Number of Tandem and Interspersed duplications
4.6 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.7k
views
Comment:
C: Number of Tandem and Interspersed duplications
4.6 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.7k
views
Answer:
A: Number of Tandem and Interspersed duplications
4.6 years ago by
d-cameron
★ 2.9k
5
votes
8
replies
2.9k
views
Are there NGS-based CNV callers that utilise allele frequency?
CNV
updated 4.7 years ago by
Biostar
20 • written 6.9 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.5k
views
Comment:
C: identifying transgene insertion site in WGS
4.8 years ago by
d-cameron
★ 2.9k
325 results • Page
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