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5
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6
replies
3.0k
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What batch correction was applied to pan-Cancer mRNA expression data?
TCGA pan-Cancer Atlas mRNA normalisation
updated 6 months ago by • 0 • written 2.7 years ago by ▴ 100
4
votes
11
replies
2.4k
views
Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
TCGA TCGAbiolinks GenomicDataCommons
updated 7 months ago by • 0 • written 3.2 years ago by ▴ 100
0
votes
1
reply
342
views
Comment: C: How to read a gzipped VCF file from a R connection
8 months ago by user31888 ▴ 100
1
vote
3
replies
342
views
How to read a gzipped VCF file from a R connection
R vcf
8 months ago by user31888 ▴ 100
1
vote
3
replies
1.8k
views
Comparing two differential expression experiments
differential expression DESeq
updated 11 months ago by 20 • written 4.6 years ago by ▴ 100
1
vote
0
replies
1.2k
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Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
3
votes
11
replies
1.2k
views
Issues installing bcftools with GNU Scientific Library
bcftools zlib
updated 2.1 years ago by 53k • written 2.1 years ago by ▴ 100
0
votes
1
reply
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
0
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1
reply
1.2k
views
Comment: C: Issues installing bcftools with GNU Scientific Library
2.1 years ago by user31888 ▴ 100
0
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1
reply
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
0
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1
reply
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
0
votes
1
reply
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
0
votes
1
reply
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
0
votes
1
reply
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
0
votes
0
replies
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
0
votes
1
reply
1.2k
views
Comment: C: Copy Number Analysis on single file
2.1 years ago by user31888 ▴ 100
1
vote
15
replies
1.2k
views
Copy Number Analysis on single file
CNV
updated 2.1 years ago by 77k • written 2.1 years ago by ▴ 100
0
votes
1
reply
729
views
Comment: C: Divergent number of replicates between FastQC and samtools
2.3 years ago by user31888 ▴ 100
1
vote
1
reply
729
views
Comment: C: Divergent number of replicates between FastQC and samtools
2.3 years ago by user31888 ▴ 100
9
votes
8
replies
729
views
Divergent number of replicates between FastQC and samtools
fastqc STAR samtools
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 100
0
votes
0
replies
729
views
Comment: C: Divergent number of replicates between FastQC and samtools
2.3 years ago by user31888 ▴ 100
0
votes
0
replies
585
views
Comment: C: Normalisation of reference dataset for scRNA cell type annotation
2.4 years ago by user31888 ▴ 100
0
votes
1
reply
585
views
Comment: C: Normalisation of reference dataset for scRNA cell type annotation
2.4 years ago by user31888 ▴ 100
0
votes
4
replies
585
views
Normalisation of reference dataset for scRNA cell type annotation
scRNA scmap cell type Human Primary Cell Atlas
2.4 years ago by user31888 ▴ 100
2
votes
10
replies
1.7k
views
Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
single cell demultiplexing
2.5 years ago by user31888 ▴ 100
0
votes
1
reply
1.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
2.5 years ago by user31888 ▴ 100
0
votes
1
reply
1.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
2.5 years ago by user31888 ▴ 100
0
votes
0
replies
1.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
2.5 years ago by user31888 ▴ 100
0
votes
0
replies
1.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
2.5 years ago by user31888 ▴ 100
0
votes
0
replies
2.8k
views
Answer: A: PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA dataset
2.5 years ago by user31888 ▴ 100
0
votes
0
replies
3.0k
views
Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
2.7 years ago by user31888 ▴ 100
0
votes
1
reply
3.0k
views
Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
2.7 years ago by user31888 ▴ 100
0
votes
1
reply
5.0k
views
Comment: C: How to normalize median-center log-transform an expression matrix
2.8 years ago by user31888 ▴ 100
1
vote
3
replies
5.0k
views
How to normalize median-center log-transform an expression matrix
R RNA-Seq
2.8 years ago by user31888 ▴ 100
0
votes
1
reply
2.4k
views
Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
3.2 years ago by user31888 ▴ 100
0
votes
1
reply
2.4k
views
Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
3.2 years ago by user31888 ▴ 100
0
votes
0
replies
1.1k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
3.2 years ago by user31888 ▴ 100
0
votes
0
replies
1.1k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
3.2 years ago by user31888 ▴ 100
0
votes
2
replies
1.1k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
3.2 years ago by user31888 ▴ 100
0
votes
1
reply
1.1k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
3.2 years ago by user31888 ▴ 100
0
votes
7
replies
1.1k
views
Convert GDCResults object (nested lists) to a human readable data frame
GenomicDataCommon R list data frame
3.2 years ago by user31888 ▴ 100
0
votes
0
replies
1.6k
views
Comment: C: featureCount vs GENCODE gene lengths
3.2 years ago by user31888 ▴ 100
3
votes
4
replies
1.6k
views
featureCount vs GENCODE gene lengths
featureCount GENCODE
updated 3.2 years ago by 22k • written 3.2 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Comment: C: featureCount vs GENCODE gene lengths
3.2 years ago by user31888 ▴ 100
0
votes
0
replies
11k
views
Comment: C: Get gene length with R
3.3 years ago by user31888 ▴ 100
0
votes
1
reply
11k
views
Comment: C: Get gene length with R
3.3 years ago by user31888 ▴ 100
0
votes
1
reply
11k
views
Comment: C: Get gene length with R
3.3 years ago by user31888 ▴ 100
3
votes
7
replies
11k
views
Get gene length with R
R
3.3 years ago by user31888 ▴ 100
0
votes
1
reply
6.1k
views
Comment: C: Normalization scaling factors: formula for applying them to raw counts
3.3 years ago by user31888 ▴ 100
0
votes
1
reply
3.5k
views
strand bias filtering with bcftools
bcftools samtools Phred
updated 3.6 years ago by 77k • written 4.5 years ago by ▴ 100
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