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1
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replies
337
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Comment:
Comment: Research Scientist - Bioinformatics position in Milan, Italy
3 days ago by
kanika.151
▴ 150
2
votes
2
replies
337
views
Job:
Research Scientist - Bioinformatics position in Milan, Italy
R
Python
RNASeq
singleCell
3 days ago by
kanika.151
▴ 150
0
votes
1
reply
634
views
Answer:
Answer: UMI RNASeq data analysis
2.4 years ago by
kanika.151
▴ 150
1
vote
0
replies
1.7k
views
Comment:
Comment: Low mapping rate due to rRNA
2.4 years ago by
kanika.151
▴ 150
0
votes
1
reply
1.0k
views
Comment:
Comment: About Whole Exome Sequencing analysis
2.4 years ago by
kanika.151
▴ 150
0
votes
0
replies
662
views
Answer:
Answer: How to find Polygenic Risk Scores?
2.4 years ago by
kanika.151
▴ 150
0
votes
0
replies
1.1k
views
Answer:
Answer: Extract R1 and R2 from sam file generated by bowtie2
2.4 years ago by
kanika.151
▴ 150
0
votes
0
replies
551
views
GnomAD subset vcf files
exac
gnomad
population
vcf
subset
2.4 years ago by
kanika.151
▴ 150
0
votes
0
replies
3.1k
views
Answer:
Answer: Some questions about call variants for mtDNA using GATK HaplotypeCaller
2.5 years ago by
kanika.151
▴ 150
0
votes
0
replies
4.4k
views
Answer:
Answer: Read Counts from miRDeep2 for posterior DE analysis
3.0 years ago by
kanika.151
▴ 150
0
votes
0
replies
3.8k
views
Answer:
Answer: How to generate the contigs ploidy priors table (yeast) for GATK DetermineGermli
3.0 years ago by
kanika.151
▴ 150
0
votes
0
replies
12k
views
Comment:
Comment: Relatedness vs relatedness2 from vcftools give different results
3.1 years ago by
kanika.151
▴ 150
0
votes
0
replies
2.9k
views
Comment:
Comment: Using wildcards in function in rules
3.4 years ago by
kanika.151
▴ 150
0
votes
1
reply
2.9k
views
Comment:
Comment: Using wildcards in function in rules
3.4 years ago by
kanika.151
▴ 150
0
votes
1
reply
2.9k
views
Comment:
Comment: Using wildcards in function in rules
3.4 years ago by
kanika.151
▴ 150
0
votes
1
reply
2.9k
views
Comment:
Comment: Using wildcards in function in rules
3.4 years ago by
kanika.151
▴ 150
0
votes
1
reply
2.9k
views
Answer:
Answer: Using wildcards in function in rules
3.4 years ago by
kanika.151
▴ 150
1
vote
2
replies
1.1k
views
Answer:
Answer: Snakemake error
3.4 years ago by
kanika.151
▴ 150
0
votes
0
replies
6.1k
views
Answer:
Answer: Difficulty filtering VCF file with vcftools
3.4 years ago by
kanika.151
▴ 150
0
votes
0
replies
4.8k
views
Comment:
Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
3.5 years ago by
kanika.151
▴ 150
0
votes
0
replies
4.8k
views
Comment:
Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
3.5 years ago by
kanika.151
▴ 150
0
votes
0
replies
2.5k
views
Comment:
Comment: gene annotation with dbNSFP_gene
3.6 years ago by
kanika.151
▴ 150
1
vote
0
replies
3.0k
views
Answer:
A: Suggest vcf filtered parameter for gatk VariantFiltration
3.7 years ago by
kanika.151
▴ 150
0
votes
0
replies
3.5k
views
Comment:
C: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
3.7 years ago by
kanika.151
▴ 150
0
votes
0
replies
2.2k
views
Comment:
C: counts reads for miRNA mapped againt mirbase
3.7 years ago by
kanika.151
▴ 150
0
votes
1
reply
3.5k
views
Answer:
A: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
3.7 years ago by
kanika.151
▴ 150
1
vote
1
reply
1.5k
views
Comment:
C: Non-coding region of WGS
3.8 years ago by
kanika.151
▴ 150
1
vote
1
reply
1.5k
views
Comment:
C: Non-coding region of WGS
3.8 years ago by
kanika.151
▴ 150
0
votes
0
replies
1.9k
views
Answer:
Answer: Which VCF's to use for BQSR in GATK
updated 19 months ago by
Ram
44k • written 3.8 years ago by
kanika.151
▴ 150
2
votes
6
replies
1.4k
views
Alignment in WES
trimmomatic
alignment
WES
exome
sequencing
updated 3.9 years ago by
Biostar
20 • written 4.0 years ago by
kanika.151
▴ 150
0
votes
1
reply
1.4k
views
Comment:
C: Alignment in WES
4.0 years ago by
kanika.151
▴ 150
0
votes
1
reply
1.4k
views
Comment:
C: Alignment in WES
4.0 years ago by
kanika.151
▴ 150
0
votes
1
reply
2.7k
views
Answer:
A: featureCounts with pseudobam
4.6 years ago by
kanika.151
▴ 150
0
votes
0
replies
5.2k
views
Comment:
C: Error ecountered while running conifer with demo data set
4.8 years ago by
kanika.151
▴ 150
0
votes
0
replies
5.2k
views
Comment:
C: Error ecountered while running conifer with demo data set
4.8 years ago by
kanika.151
▴ 150
0
votes
0
replies
5.2k
views
Comment:
C: Error ecountered while running conifer with demo data set
4.8 years ago by
kanika.151
▴ 150
0
votes
0
replies
2.2k
views
Answer:
A: tables.exceptions.NoSuchNodeError: group ``/`` does not have a child named ``sam
4.8 years ago by
kanika.151
▴ 150
0
votes
0
replies
5.2k
views
Comment:
C: Error ecountered while running conifer with demo data set
4.8 years ago by
kanika.151
▴ 150
0
votes
0
replies
4.0k
views
Comment:
C: 1 base pair to 'x' byte conversion
4.8 years ago by
kanika.151
▴ 150
2
votes
6
replies
4.0k
views
1 base pair to 'x' byte conversion
fastq file
cluster
conversion
base pairs
byte
4.8 years ago by
kanika.151
▴ 150
0
votes
1
reply
4.0k
views
Comment:
A: 1 base pair to 'x' byte conversion
4.8 years ago by
kanika.151
▴ 150
0
votes
0
replies
722
views
Answer:
A: GATK Indelrealignment Problem : The input is truncated?
4.8 years ago by
kanika.151
▴ 150
1
vote
0
replies
19k
views
Answer:
A: Extract Dendrogram Information From Heatmap Generated By Heatmap.2
updated 4.9 years ago by
Ram
44k • written 8.8 years ago by
kanika.151
▴ 150
0
votes
1
reply
4.7k
views
Comment:
C: featureCounts segmentation fault, Is there any solution yet ?
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
kanika.151
▴ 150
0
votes
0
replies
3.6k
views
Answer:
A: Trinity predicting more number of genes?
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
kanika.151
▴ 150
0
votes
0
replies
3.6k
views
Comment:
C: Trinity predicting more number of genes?
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
kanika.151
▴ 150
0
votes
1
reply
4.7k
views
Comment:
C: featureCounts segmentation fault, Is there any solution yet ?
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
kanika.151
▴ 150
1
vote
0
replies
9.0k
views
Comment:
C: htseq-count cannot find pysam
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
kanika.151
▴ 150
0
votes
0
replies
12k
views
Comment:
C: Converting PDBQT output to PDB in VINA
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
kanika.151
▴ 150
0
votes
0
replies
3.3k
views
Comment:
C: Which one is better and Why? edgeR DESeq2
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
kanika.151
▴ 150
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