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Comment: Comment: Align Illumina short reads to a subset of human reference genome
13 months ago by Thomas ▴ 160
2
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Answer: Answer: Align Illumina short reads to a subset of human reference genome
13 months ago by Thomas ▴ 160
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3.6k
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Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
13 months ago by Thomas ▴ 160
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1
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3.6k
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Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
13 months ago by Thomas ▴ 160
17
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10
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3.6k
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Looking for a tool which provides mapping quality score distributions from BAM files
picard samtools multiqc
13 months ago by Thomas ▴ 160
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0
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3.6k
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Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
2.0 years ago by Thomas ▴ 160
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0
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3.6k
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Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
2.0 years ago by Thomas ▴ 160
5
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1
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893
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What does samtools mean by 'orientation' when marking duplicates?
read_orientation samtools htslib
updated 2.1 years ago by ▴ 210 • written 2.1 years ago by ▴ 160
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3.6k
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Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
2.1 years ago by Thomas ▴ 160
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8.2k
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Answer: A: which is better for rna-seq analysis? R or python?
3.3 years ago by Thomas ▴ 160
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2.4k
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Comment: C: Problem starting and running Gmaj (MAF file viewer and manipulator)
3.4 years ago by Thomas ▴ 160
9
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3
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1.4k
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Salmon: Any downstream DEA tools which uses abundance estimate variation information?
salmon deseq2
updated 3.4 years ago by 77k • written 4.6 years ago by ▴ 160
0
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1
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3.1k
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Comment: C: Ensembl BioMart - How to get Transcript IDs version increment?
updated 3.7 years ago by 40k • written 7.7 years ago by ▴ 160
0
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0
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3.1k
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Comment: C: Ensembl BioMart - How to get Transcript IDs version increment?
updated 3.7 years ago by 40k • written 7.7 years ago by ▴ 160
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8.7k
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Comment: C: Is There An Easy Way To Read The Maf Files On The Ucsc Website?
updated 3.8 years ago by 40k • written 7.7 years ago by ▴ 160
1
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4
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2.4k
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Problem starting and running Gmaj (MAF file viewer and manipulator)
Gmaj JRE Java MAF UCSC
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 160
0
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1
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1.9k
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Comment: C: Transcripts associated with microRNAs
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 160
0
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1
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1.9k
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Comment: C: Transcripts associated with microRNAs
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 160
0
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1
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1.9k
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Answer: A: Transcripts associated with microRNAs
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 160
5
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5
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6.1k
views
Cufflinks gffread utility
cufflinks gffread gff reverse complement
updated 5.1 years ago by • 0 • written 7.3 years ago by ▴ 160
5
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4
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2.5k
views
Running Galaxy tools locally using bx-python
bx-python Galaxy MAF Stitch-MAF-blocks
updated 14 months ago by 40k • written 7.7 years ago by ▴ 160
0
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0
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1.1k
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Annotate pairwise alignment with query sequence quality scores
alignment quality scores
5.4 years ago by Thomas ▴ 160
0
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1
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9.2k
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Comment: C: kallisto: strand-specific and fragment length calculation
5.7 years ago by Thomas ▴ 160
1
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0
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1.5k
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Answer: A: Trouble running vcf2phyloviz.py
5.8 years ago by Thomas ▴ 160
1
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1
reply
1.5k
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Trouble running vcf2phyloviz.py
vcf2phyloviz vcf PyVCF
5.8 years ago by Thomas ▴ 160
1
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0
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8.0k
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Comment: C: Getting average fragment length for single end reads
6.0 years ago by Thomas ▴ 160
0
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0
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1.7k
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freebayes VCF output (FREQ header)
freebayes VCF
6.0 years ago by Thomas ▴ 160
2
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5
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2.6k
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Potential bug in mafsInRegion?
mafsInRegion UCSC UCSC_genome_browser
updated 6.4 years ago by ▴ 20 • written 6.8 years ago by ▴ 160
0
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0
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1.4k
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Comment: C: Problem using MIRZA (miRNA target prediction tool)
6.6 years ago by Thomas ▴ 160
0
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1
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1.4k
views
Problem using MIRZA (miRNA target prediction tool)
mirza miRNA target prediction miRNA expression
6.6 years ago by Thomas ▴ 160
0
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0
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1.6k
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Problems installing CONTRAfold
contrafold compiling MIRZA installation
6.6 years ago by Thomas ▴ 160
0
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0
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2.6k
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Comment: C: Potential bug in mafsInRegion?
6.6 years ago by Thomas ▴ 160
0
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0
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4.0k
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Comment: C: Cannot load package "hgu133a.db"
6.7 years ago by Thomas ▴ 160
2
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1
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2.9k
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Answer: A: Why don't phylogenetic analyses using DNA sequences and protein sequences result
6.8 years ago by Thomas ▴ 160
0
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1
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2.8k
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Comment: C: Best way to define the Background Genes to compare overlapping DE genes from mic
6.8 years ago by Thomas ▴ 160
0
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1
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1.9k
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Answer: A: Pathway analysis for miRNAs
7.0 years ago by Thomas ▴ 160
0
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0
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2.5k
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Comment: C: Tair Seems To Show Incorrect Annotation For A Spliced Gene
7.3 years ago by Thomas ▴ 160
1
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0
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1.8k
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Calculate mirSVR scores for custom sequences?
miRNA miRanda mirSVR Target Prediction
7.4 years ago by Thomas ▴ 160
0
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1
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2.7k
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Comment: C: miRNA binding position in 5' UTR, CDS, and 3' UTR
7.6 years ago by Thomas ▴ 160
0
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1
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2.1k
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Comment: C: Biotech Graduate aiming for bioinformatics MS leading to PhD
7.6 years ago by Thomas ▴ 160
2
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0
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3.9k
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Answer: Answer: Is there some databases can predict the function of miRNA
updated 14 months ago by 40k • written 7.6 years ago by ▴ 160
1
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0
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1.8k
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Answer: A: Bioinformatics / Computational Biology PhD
7.6 years ago by Thomas ▴ 160
0
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0
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1.5k
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Comment: C: Why Biostars can be popular and succeed so quick
7.6 years ago by Thomas ▴ 160
8
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5
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3.1k
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Ensembl BioMart - How to get Transcript IDs version increment?
Ensembl transcript-IDs Biomart version
updated 14 months ago by 40k • written 7.7 years ago by ▴ 160
0
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0
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2.5k
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Comment: C: Running Galaxy tools locally using bx-python
7.7 years ago by Thomas ▴ 160
0
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0
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2.5k
views
Comment: C: Running Galaxy tools locally using bx-python
7.7 years ago by Thomas ▴ 160
0
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0
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3.7k
views
Comment: Comment: how to use galaxy tool interval_maf_to_merged_fasta.py which is the command-line
updated 20 months ago by 40k • written 7.7 years ago by ▴ 160
0
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1
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2.5k
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Comment: C: Bug in bx-python maf?
7.7 years ago by Thomas ▴ 160
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