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9
votes
7
replies
1.5k
views
Looking for a tool which provides mapping quality score distributions from BAM files
picard samtools multiqc
updated 11 months ago by 148k • written 12 months ago by ▴ 120
0
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0
replies
1.5k
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Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
11 months ago by Thomas ▴ 120
0
votes
0
replies
1.5k
views
Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
11 months ago by Thomas ▴ 120
5
votes
1
reply
514
views
What does samtools mean by 'orientation' when marking duplicates?
read_orientation samtools htslib
updated 11 months ago by ▴ 110 • written 12 months ago by ▴ 120
0
votes
0
replies
1.5k
views
Comment: Comment: Looking for a tool which provides mapping quality score distributions from BAM f
12 months ago by Thomas ▴ 120
1
vote
0
replies
5.6k
views
Answer: A: which is better for rna-seq analysis? R or python?
2.2 years ago by Thomas ▴ 120
0
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0
replies
2.1k
views
Comment: C: Problem starting and running Gmaj (MAF file viewer and manipulator)
2.3 years ago by Thomas ▴ 120
9
votes
3
replies
1.1k
views
Salmon: Any downstream DEA tools which uses abundance estimate variation information?
salmon deseq2
updated 2.3 years ago by 64k • written 3.5 years ago by ▴ 120
0
votes
1
reply
2.8k
views
Comment: C: Ensembl BioMart - How to get Transcript IDs version increment?
updated 2.6 years ago by 36k • written 6.5 years ago by ▴ 120
0
votes
0
replies
2.8k
views
Comment: C: Ensembl BioMart - How to get Transcript IDs version increment?
updated 2.6 years ago by 36k • written 6.5 years ago by ▴ 120
0
votes
0
replies
8.0k
views
Comment: C: Is There An Easy Way To Read The Maf Files On The Ucsc Website?
updated 2.7 years ago by 36k • written 6.6 years ago by ▴ 120
1
vote
4
replies
2.1k
views
Problem starting and running Gmaj (MAF file viewer and manipulator)
Gmaj JRE Java MAF UCSC
updated 3.9 years ago by 36k • written 6.5 years ago by ▴ 120
0
votes
1
reply
1.7k
views
Comment: C: Transcripts associated with microRNAs
updated 3.9 years ago by 36k • written 6.5 years ago by ▴ 120
0
votes
1
reply
1.7k
views
Comment: C: Transcripts associated with microRNAs
updated 3.9 years ago by 36k • written 6.5 years ago by ▴ 120
0
votes
1
reply
1.7k
views
Answer: A: Transcripts associated with microRNAs
updated 3.9 years ago by 36k • written 6.5 years ago by ▴ 120
5
votes
5
replies
5.4k
views
Cufflinks gffread utility
cufflinks gffread gff reverse complement
updated 3.9 years ago by • 0 • written 6.2 years ago by ▴ 120
5
votes
4
replies
2.2k
views
Running Galaxy tools locally using bx-python
bx-python Galaxy MAF Stitch-MAF-blocks
updated 15 days ago by 36k • written 6.6 years ago by ▴ 120
0
votes
0
replies
939
views
Annotate pairwise alignment with query sequence quality scores
alignment quality scores
4.3 years ago by Thomas ▴ 120
0
votes
1
reply
7.5k
views
Comment: C: kallisto: strand-specific and fragment length calculation
4.6 years ago by Thomas ▴ 120
1
vote
0
replies
1.4k
views
Answer: A: Trouble running vcf2phyloviz.py
4.7 years ago by Thomas ▴ 120
1
vote
1
reply
1.4k
views
Trouble running vcf2phyloviz.py
vcf2phyloviz vcf PyVCF
4.7 years ago by Thomas ▴ 120
1
vote
0
replies
6.7k
views
Comment: C: Getting average fragment length for single end reads
4.8 years ago by Thomas ▴ 120
0
votes
0
replies
1.5k
views
freebayes VCF output (FREQ header)
freebayes VCF
4.8 years ago by Thomas ▴ 120
2
votes
5
replies
2.1k
views
Potential bug in mafsInRegion?
mafsInRegion UCSC UCSC_genome_browser
updated 5.3 years ago by ▴ 20 • written 5.7 years ago by ▴ 120
0
votes
0
replies
1.2k
views
Comment: C: Problem using MIRZA (miRNA target prediction tool)
5.5 years ago by Thomas ▴ 120
0
votes
1
reply
1.2k
views
Problem using MIRZA (miRNA target prediction tool)
mirza miRNA target prediction miRNA expression
5.5 years ago by Thomas ▴ 120
0
votes
0
replies
1.4k
views
Problems installing CONTRAfold
contrafold compiling MIRZA installation
5.5 years ago by Thomas ▴ 120
0
votes
0
replies
2.1k
views
Comment: C: Potential bug in mafsInRegion?
5.5 years ago by Thomas ▴ 120
0
votes
0
replies
3.7k
views
Comment: C: Cannot load package "hgu133a.db"
5.6 years ago by Thomas ▴ 120
2
votes
1
reply
2.3k
views
Answer: A: Why don't phylogenetic analyses using DNA sequences and protein sequences result
5.7 years ago by Thomas ▴ 120
0
votes
1
reply
2.5k
views
Comment: C: Best way to define the Background Genes to compare overlapping DE genes from mic
5.7 years ago by Thomas ▴ 120
0
votes
1
reply
1.6k
views
Answer: A: Pathway analysis for miRNAs
5.9 years ago by Thomas ▴ 120
0
votes
0
replies
2.3k
views
Comment: C: Tair Seems To Show Incorrect Annotation For A Spliced Gene
6.2 years ago by Thomas ▴ 120
1
vote
0
replies
1.6k
views
Calculate mirSVR scores for custom sequences?
miRNA miRanda mirSVR Target Prediction
6.3 years ago by Thomas ▴ 120
0
votes
1
reply
2.3k
views
Comment: C: miRNA binding position in 5' UTR, CDS, and 3' UTR
6.5 years ago by Thomas ▴ 120
0
votes
1
reply
1.8k
views
Comment: C: Biotech Graduate aiming for bioinformatics MS leading to PhD
6.5 years ago by Thomas ▴ 120
2
votes
0
replies
3.6k
views
Answer: Answer: Is there some databases can predict the function of miRNA
updated 5 weeks ago by 36k • written 6.5 years ago by ▴ 120
1
vote
0
replies
1.5k
views
Answer: A: Bioinformatics / Computational Biology PhD
6.5 years ago by Thomas ▴ 120
0
votes
0
replies
1.3k
views
Comment: C: Why Biostars can be popular and succeed so quick
6.5 years ago by Thomas ▴ 120
8
votes
5
replies
2.8k
views
Ensembl BioMart - How to get Transcript IDs version increment?
Ensembl transcript-IDs Biomart version
updated 20 days ago by 36k • written 6.5 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: Running Galaxy tools locally using bx-python
6.6 years ago by Thomas ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: Running Galaxy tools locally using bx-python
6.6 years ago by Thomas ▴ 120
0
votes
0
replies
3.4k
views
Comment: Comment: how to use galaxy tool interval_maf_to_merged_fasta.py which is the command-line
updated 6 months ago by 36k • written 6.6 years ago by ▴ 120
0
votes
1
reply
2.1k
views
Comment: C: Bug in bx-python maf?
6.6 years ago by Thomas ▴ 120
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