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Comment: C: Problem: GATK insallation
6.1 years ago by Nicolas Rosewick 11k
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3.8k
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Comment: C: Tranche Plot after VSQR
6.1 years ago by Nicolas Rosewick 11k
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1
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3.8k
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Answer: A: Tranche Plot after VSQR
6.1 years ago by Nicolas Rosewick 11k
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1
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1.8k
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Comment: C: Distribution of mapped reads
6.1 years ago by Nicolas Rosewick 11k
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3.8k
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Comment: C: Tranche Plot after VSQR
6.1 years ago by Nicolas Rosewick 11k
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1
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9.3k
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Comment: C: Transform log2 fold changes in z-scores
6.1 years ago by Nicolas Rosewick 11k
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1
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9.3k
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Comment: C: Transform log2 fold changes in z-scores
6.1 years ago by Nicolas Rosewick 11k
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1.7k
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Answer: A: Translate long names of proteins to short names
6.1 years ago by Nicolas Rosewick 11k
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1
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21k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
6.1 years ago by Nicolas Rosewick 11k
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3.3k
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Comment: C: How to index a large fasta file (>100GB) by using bowtie2-build
6.1 years ago by Nicolas Rosewick 11k
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1
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4.1k
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Comment: C: Vcf produced after ApplyVSQR step
6.1 years ago by Nicolas Rosewick 11k
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1
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4.1k
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Comment: C: Vcf produced after ApplyVSQR step
6.1 years ago by Nicolas Rosewick 11k
3
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3.7k
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Answer: A: STAR genome generate taking long time and less thread.
6.1 years ago by Nicolas Rosewick 11k
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1.4k
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Comment: C: Analysis of exome samples build from different exome kits
6.2 years ago by Nicolas Rosewick 11k
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2.3k
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Answer: A: Can Mutect2 be used for paper?
6.2 years ago by Nicolas Rosewick 11k
2
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1
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4.3k
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Comment: C: Standardised to a mean of 0 and standard deviation 1
6.2 years ago by Nicolas Rosewick 11k
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1.3k
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Comment: C: Is there any written script to assemble multiple fastq file from accession id?
6.2 years ago by Nicolas Rosewick 11k
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2
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6.0k
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Comment: C: Erro in the BaseRecalibrator arguments
6.2 years ago by Nicolas Rosewick 11k
2
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3
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11k
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Comment: C: How to remove outliers using PCA in R?
6.2 years ago by Nicolas Rosewick 11k
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1
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11k
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Comment: C: How to remove outliers using PCA in R?
6.2 years ago by Nicolas Rosewick 11k
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1
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11k
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Comment: C: How to remove outliers using PCA in R?
6.2 years ago by Nicolas Rosewick 11k
1
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1
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3.6k
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Answer: A: Correlation test for multiple variables and adjusted p values
6.2 years ago by Nicolas Rosewick 11k
2
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1
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1.1k
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Answer: A: Evolutionary distance from as many organisms as possible to humans
6.2 years ago by Nicolas Rosewick 11k
2
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1.4k
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Answer: A: Filtering 2-fold differentially expressed genes
6.2 years ago by Nicolas Rosewick 11k
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0
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1.1k
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Number of samples with rare mutation per gene in gnomAD
gnomad mutation
6.2 years ago by Nicolas Rosewick 11k
3
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0
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5.8k
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Answer: A: Struggling to use the GATK HaplotypeCaller on my bam files.
updated 6.2 years ago by 48k • written 6.2 years ago by 11k
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2.3k
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Comment: C: How to predict sample ethnicty from a VCF using 1000G or gnomAD ?
6.2 years ago by Nicolas Rosewick 11k
4
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2
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2.3k
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How to predict sample ethnicty from a VCF using 1000G or gnomAD ?
SNP ethnicity vcf gnomad 1000g
updated 6.2 years ago by 48k • written 6.2 years ago by 11k
4
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1
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4.3k
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Answer: A: Best practices for differential expression analysis
6.2 years ago by Nicolas Rosewick 11k
0
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0
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12k
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Comment: C: GenomicRanges : How to reduce a GRanges by gene
6.3 years ago by Nicolas Rosewick 11k
0
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0
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12k
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Comment: C: GenomicRanges : How to reduce a GRanges by gene
6.3 years ago by Nicolas Rosewick 11k
0
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1
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12k
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Comment: C: GenomicRanges : How to reduce a GRanges by gene
6.3 years ago by Nicolas Rosewick 11k
0
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1.9k
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Answer: A: How to interpret results from GATK ApplyVQSR
6.3 years ago by Nicolas Rosewick 11k
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2.0k
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Comment: C: Triplet frequencies in human genome
6.3 years ago by Nicolas Rosewick 11k
0
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1
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2.0k
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Comment: C: Triplet frequencies in human genome
6.3 years ago by Nicolas Rosewick 11k
4
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1
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7.8k
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Answer: A: GATK quality recalibration to get recalibrated BAM files before SNP calling
6.3 years ago by Nicolas Rosewick 11k
2
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6
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7.5k
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6 follow
RNA-Seq analysis across different species
RNA-Seq species
updated 3.2 years ago by 45k • written 10.4 years ago by 11k
1
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1
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4.8k
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Answer: A: Problem with R tools from command line.
updated 6.3 years ago by 45k • written 6.3 years ago by 11k
0
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1
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3.8k
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Comment: C: How to parse BAM files without requiring huge memory?
6.3 years ago by Nicolas Rosewick 11k
1
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0
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3.7k
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Comment: C: what to do when differential analysis heatmap looks like this?
6.3 years ago by Nicolas Rosewick 11k
0
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0
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2.2k
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Comment: C: What to pay attention when analyzing RNA-Seq samples from FFPE ?
6.4 years ago by Nicolas Rosewick 11k
0
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0
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2.2k
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Comment: C: What to pay attention when analyzing RNA-Seq samples from FFPE ?
6.4 years ago by Nicolas Rosewick 11k
7
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6
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2.2k
views
What to pay attention when analyzing RNA-Seq samples from FFPE ?
RNA-Seq ffpe
updated 6.4 years ago by 9.0k • written 6.4 years ago by 11k
0
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1
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4.5k
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Comment: C: Microsatellite Instability (MSI)
6.4 years ago by Nicolas Rosewick 11k
0
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1
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4.5k
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Comment: C: Microsatellite Instability (MSI)
6.4 years ago by Nicolas Rosewick 11k
1
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0
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1.7k
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Comment: C: Extract multi exonic genes from gtf files
6.4 years ago by Nicolas Rosewick 11k
2
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3
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3.4k
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Fusion Isoform Quantification
fusion isoform
updated 6.4 years ago by 20 • written 11.5 years ago by 11k
0
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1
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1.8k
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Mutation Co-occurence and exclusivity
mutation co-occurence exclusivity
updated 6.4 years ago by 20 • written 6.6 years ago by 11k
0
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1
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4.5k
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Comment: C: Microsatellite Instability (MSI)
6.4 years ago by Nicolas Rosewick 11k
0
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1
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4.5k
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Comment: C: Microsatellite Instability (MSI)
6.4 years ago by Nicolas Rosewick 11k
1,080 results • Page 5 of 22
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