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0
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2
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2.5k
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Comment: C: Is the union of cDNA sequences the exome?
7.0 years ago by Nicolas Rosewick 11k
1
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0
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3.2k
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Comment: C: averaging with technical and biological replicates
7.0 years ago by Nicolas Rosewick 11k
1
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0
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3.3k
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Answer: A: Get indices from GenomicRanges reduce function
7.0 years ago by Nicolas Rosewick 11k
1
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2
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7.5k
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Comment: C: gene expression analysis using RNA seq data
7.0 years ago by Nicolas Rosewick 11k
3
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1
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3.3k
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Answer: A: How to "Randomly" Select Genes
7.0 years ago by Nicolas Rosewick 11k
1
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1
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7.5k
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Comment: C: gene expression analysis using RNA seq data
7.0 years ago by Nicolas Rosewick 11k
2
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0
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8.5k
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Comment: C: RNA-STAR, mapping problem (number of reads)
updated 7.0 years ago by 45k • written 9.6 years ago by 11k
1
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0
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8.5k
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Comment: C: RNA-STAR, mapping problem (number of reads)
updated 7.0 years ago by 45k • written 9.6 years ago by 11k
9
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3
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8.1k
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Answer: A: Optimize bwa mem in parallel on a SLURM cluster
7.0 years ago by Nicolas Rosewick 11k
0
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0
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8.1k
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Comment: C: Optimize bwa mem in parallel on a SLURM cluster
7.0 years ago by Nicolas Rosewick 11k
0
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1
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8.1k
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Comment: C: Optimize bwa mem in parallel on a SLURM cluster
7.0 years ago by Nicolas Rosewick 11k
0
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0
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1.6k
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Comment: C: discrepancy between reads
7.0 years ago by Nicolas Rosewick 11k
0
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0
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8.1k
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Comment: C: Optimize bwa mem in parallel on a SLURM cluster
7.0 years ago by Nicolas Rosewick 11k
4
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2
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8.4k
views
GRanges : setdiff and keep extra columns
GenomicRanges
updated 7.0 years ago by 89k • written 8.2 years ago by 11k
1
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1
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2.3k
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Comment: C: STAR alignment results in large chunks of NNNNNs
7.1 years ago by Nicolas Rosewick 11k
1
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1
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13k
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Comment: C: best way to visualize bam file
7.1 years ago by Nicolas Rosewick 11k
4
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1
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13k
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Answer: A: best way to visualize bam file
7.1 years ago by Nicolas Rosewick 11k
0
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1
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2.3k
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Comment: C: Expression of specific genes between tumor and normal
7.2 years ago by Nicolas Rosewick 11k
1
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2
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2.3k
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Comment: C: Expression of specific genes between tumor and normal
7.2 years ago by Nicolas Rosewick 11k
2
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1
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2.3k
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Answer: A: Expression of specific genes between tumor and normal
7.2 years ago by Nicolas Rosewick 11k
0
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0
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2.0k
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Comment: C: Dummy / simulated genomic data
7.2 years ago by Nicolas Rosewick 11k
7
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4
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2.0k
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Dummy / simulated genomic data
data dummy simulated
7.2 years ago by Nicolas Rosewick 11k
2
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8
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12k
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Size of typical genomic data
genomic
updated 2.5 years ago by 45k • written 7.4 years ago by 11k
0
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1
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12k
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Comment: C: Size of typical genomic data
7.4 years ago by Nicolas Rosewick 11k
0
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0
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5.7k
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Comment: C: Compute correlation for depth of coverage between 2 datasets with different leng
7.4 years ago by Nicolas Rosewick 11k
0
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1
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3.2k
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Comment: C: SAM CIGAR parsing and position counter in R
7.4 years ago by Nicolas Rosewick 11k
2
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1
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3.2k
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Comment: C: SAM CIGAR parsing and position counter in R
7.4 years ago by Nicolas Rosewick 11k
0
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0
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5.7k
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Comment: C: compute correlation for depth of coverage between 2 datasets with different leng
7.4 years ago by Nicolas Rosewick 11k
1
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2
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5.7k
views
Answer: A: compute correlation for depth of coverage between 2 datasets with different leng
7.4 years ago by Nicolas Rosewick 11k
0
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1
reply
5.7k
views
Comment: C: compute correlation for depth of coverage between 2 datasets with different leng
7.4 years ago by Nicolas Rosewick 11k
0
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1
reply
5.7k
views
Comment: C: compute correlation for depth of coverage between 2 datasets with different leng
7.4 years ago by Nicolas Rosewick 11k
2
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0
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12k
views
Answer: A: NGS analysis: how to handle paired-end reads
7.4 years ago by Nicolas Rosewick 11k
2
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2
replies
6.7k
views
Answer: A: how to run bioinformatics tools via docker
7.4 years ago by Nicolas Rosewick 11k
0
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1
reply
4.8k
views
Comment: C: How to use tidyr package to average replicate data for different time points and
7.4 years ago by Nicolas Rosewick 11k
0
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2
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1.9k
views
Answer: A: Finding cancer gene sequences
7.4 years ago by Nicolas Rosewick 11k
1
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0
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9.1k
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Comment: C: merge BAM files from different lanes
7.4 years ago by Nicolas Rosewick 11k
1
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1
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9.1k
views
Answer: A: merge BAM files from different lanes
7.4 years ago by Nicolas Rosewick 11k
0
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0
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1.8k
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Comment: C: find overlapping sequences and report min start and max end positions
7.4 years ago by Nicolas Rosewick 11k
2
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2
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3.7k
views
Answer: A: detecting insertion sites of transgene in mouse genome
7.4 years ago by Nicolas Rosewick 11k
3
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1
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3.6k
views
Answer: A: How to separate protein-coding and non-coding in gtf file
7.4 years ago by Nicolas Rosewick 11k
0
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0
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3.6k
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Comment: C: How to separate protein-coding and non-coding in gtf file
7.4 years ago by Nicolas Rosewick 11k
0
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0
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23k
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Comment: C: Volcano plot help code
7.4 years ago by Nicolas Rosewick 11k
0
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1
reply
5.3k
views
Comment: C: How to highlight DE genes in plotMD ?
7.5 years ago by Nicolas Rosewick 11k
0
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0
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3.1k
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Comment: C: The efficient way to generate fasta and bed files
7.5 years ago by Nicolas Rosewick 11k
0
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0
replies
11k
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Comment: C: Computer requirements for RNAseq alignment
7.5 years ago by Nicolas Rosewick 11k
1
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0
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11k
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Answer: A: Computer requirements for RNAseq alignment
7.5 years ago by Nicolas Rosewick 11k
0
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1
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3.1k
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Comment: C: The best way to convert fasta file to bed format
7.5 years ago by Nicolas Rosewick 11k
162
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24
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69k
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19 follow
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
alternative-splicing splicing rna-seq
updated 2.3 years ago by 45k • written 12.6 years ago by 11k
1
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0
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4.3k
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Comment: C: Count non-coding genes using featureCounts
7.5 years ago by Nicolas Rosewick 11k
0
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0
replies
1.9k
views
Answer: A: Significance between two sets of DEGs from same species
7.5 years ago by Nicolas Rosewick 11k
1,080 results • Page 8 of 22
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