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7
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1
reply
3.4k
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How to force GATK haplotypecaller to output all genomic position (even non variant positions)
GATK haplotypecaller
updated 4.0 years ago by ▴ 750 • written 4.0 years ago by 11k
0
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2
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1.0k
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Comment: C: how to find candidate genes using linear regression in R
4.0 years ago by Nicolas Rosewick 11k
0
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1
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1.0k
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Comment: C: Structural variation germline vs somatic ?
4.1 years ago by Nicolas Rosewick 11k
0
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0
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739
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Comment: C: bam file: get date that alignment was run
4.1 years ago by Nicolas Rosewick 11k
0
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0
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4.4k
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Comment: C: Use padj instead of p-value to ploting DE genes using EnhancedVolcano
4.1 years ago by Nicolas Rosewick 11k
4
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3
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2.3k
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vcfanno: issues to annotate VCF with gnomAD r3.0
vcfanno gnomAD
updated 4.1 years ago by 43k • written 4.1 years ago by 11k
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0
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2.3k
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Comment: C: [SOLVED] vcfanno: issues to annotate VCF with gnomAD r3.0
4.1 years ago by Nicolas Rosewick 11k
1
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0
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2.3k
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Answer: A: [SOLVED] vcfanno: issues to annotate VCF with gnomAD r3.0
4.1 years ago by Nicolas Rosewick 11k
0
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0
replies
1.2k
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Comment: C: Retrieving multiple regions (from a list) in a bam file and outputing as a table
4.1 years ago by Nicolas Rosewick 11k
0
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1
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1.2k
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Comment: C: Retrieving multiple regions (from a list) in a bam file and outputing as a table
4.1 years ago by Nicolas Rosewick 11k
2
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0
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5.7k
views
Answer: A: Trying To Pull Regions From An Online Bam File Without Downloading
4.1 years ago by Nicolas Rosewick 11k
1
vote
1
reply
3.6k
views
Comment: C: script in R to convert DNA to RNA sequence
4.2 years ago by Nicolas Rosewick 11k
0
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0
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810
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Genome Nexus : API access through R
Genome Nexus API R
4.2 years ago by Nicolas Rosewick 11k
24
votes
16
replies
9.3k
views
GenomicRanges : How to reduce a GRanges by gene
genomicranges granges reduce R
updated 4.2 years ago by 82k • written 4.8 years ago by 11k
0
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1
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2.8k
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Comment: C: feature selection using random forest
4.2 years ago by Nicolas Rosewick 11k
0
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0
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1.1k
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Comment: C: Cutdapt for batch processing ?
4.2 years ago by Nicolas Rosewick 11k
0
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0
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563
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Answer: A: How to determine the list of all genes (at least expressed once in RNA Seq Exper
4.2 years ago by Nicolas Rosewick 11k
0
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1
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4.4k
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Comment: C: GSVA on RNAseq data (GTEX)
4.2 years ago by Nicolas Rosewick 11k
0
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0
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1.2k
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Comment: C: Scatter / Gather for BaseRecalibrator on a single human WES dataset?
4.2 years ago by Nicolas Rosewick 11k
0
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1
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2.7k
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Comment: C: Should I keep up with random contigs in human genome
4.3 years ago by Nicolas Rosewick 11k
2
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0
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2.1k
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Comment: C: Remove duplicate reads before variant calling?
4.3 years ago by Nicolas Rosewick 11k
1
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0
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1.6k
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Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
4.3 years ago by Nicolas Rosewick 11k
0
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1
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1.6k
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Answer: A: Should I merge the Paired-end RNA-seq reads for BLAT
4.3 years ago by Nicolas Rosewick 11k
0
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1
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2.3k
views
Comment: C: Student's t-test (For Paired samples) calculation
updated 4.3 years ago by 43k • written 8.2 years ago by 11k
1
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1
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2.3k
views
Answer: A: Student's t-test (For Paired samples) calculation
updated 4.3 years ago by 43k • written 8.2 years ago by 11k
0
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1
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4.4k
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Comment: C: What causes tophat_reports error?
updated 4.3 years ago by 43k • written 9.9 years ago by 11k
4
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0
replies
2.6k
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Extract gnomad AF for specific position and REF/ALT allele with R
R gnomad af allele frequency annotation
4.3 years ago by Nicolas Rosewick 11k
0
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0
replies
2.6k
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Comment: C: samtools + map
updated 4.3 years ago by 43k • written 10.0 years ago by 11k
1
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0
replies
3.3k
views
Answer: A: How will i map exons (FASTA Format) onto human genome to get the genomic coordin
updated 4.4 years ago by 43k • written 10.0 years ago by 11k
0
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0
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7.2k
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Comment: C: Pick random position from specific genomic regions
updated 4.4 years ago by 43k • written 10.0 years ago by 11k
0
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0
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7.2k
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Comment: C: Pick random position from specific genomic regions
updated 4.4 years ago by 43k • written 10.0 years ago by 11k
0
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1
reply
7.2k
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Comment: C: Pick random position from specific genomic regions
updated 4.4 years ago by 43k • written 10.0 years ago by 11k
0
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1
reply
1.1k
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Comment: C: Homozygot genotype information but SNP is heterozygous
4.4 years ago by Nicolas Rosewick 11k
2
votes
1
reply
6.8k
views
Comment: C: How to TMM after HTSeq-count?
updated 4.4 years ago by 43k • written 8.4 years ago by 11k
0
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1
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735
views
Comment: C: Overlap two variable
4.4 years ago by Nicolas Rosewick 11k
1
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1
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4.8k
views
Answer: A: Find closest gene to chromosome location
updated 4.4 years ago by 43k • written 8.4 years ago by 11k
0
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0
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725
views
Comment: C: grouping of maf results in GWAS
4.4 years ago by Nicolas Rosewick 11k
1
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0
replies
979
views
Answer: A: Creating a set of rare variants shared by a child and a parents with VCF and Tab
4.4 years ago by Nicolas Rosewick 11k
0
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0
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8.7k
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Comment: C: Bwa Specify Number Of Maximum Mismatches And Gaps
updated 4.4 years ago by 43k • written 12.5 years ago by 11k
2
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0
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1.4k
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Answer: C: How could I get population or individual specific genotypes from multi sample VC
4.4 years ago by Nicolas Rosewick 11k
1
vote
0
replies
918
views
Answer: A: Technical challenges inherent to WES processing - any recommended review sources
4.4 years ago by Nicolas Rosewick 11k
0
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0
replies
3.4k
views
Comment: C: The best aligner to align RNA-Seq data into mitochondria genome
updated 4.4 years ago by 43k • written 8.4 years ago by 11k
0
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1
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1.0k
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Comment: C: GWAS result too significant
4.4 years ago by Nicolas Rosewick 11k
0
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1
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1.6k
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Comment: C: Germline - somatic mutation co-occurrence analysis
4.4 years ago by Nicolas Rosewick 11k
0
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1
reply
1.6k
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Comment: C: Germline - somatic mutation co-occurrence analysis
4.4 years ago by Nicolas Rosewick 11k
5
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5
replies
1.6k
views
Germline - somatic mutation co-occurrence analysis
mutation co-occurrence
4.4 years ago by Nicolas Rosewick 11k
1
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1
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7.9k
views
Answer: A: Plotting a line graph using the ggplot2 for multiple columns (genes)
4.4 years ago by Nicolas Rosewick 11k
0
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0
replies
3.8k
views
Comment: C: deseq2 read counts vs featurecount read counts
4.4 years ago by Nicolas Rosewick 11k
1
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1
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3.8k
views
Comment: C: deseq2 read counts vs featurecount read counts
4.4 years ago by Nicolas Rosewick 11k
1
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0
replies
2.0k
views
Comment: C: using DEseq to produce RPKM and VST
updated 4.4 years ago by 43k • written 8.6 years ago by 11k
1,078 results • Page 3 of 22
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