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Re-evaluating SAM/BAM bitflags after modifying the file
alignment
3.5 years ago by Antonio Camargo ▴ 160
5
votes
7
replies
3.6k
views
Bowtie2 and BWA-MEM giving very different results in metagenomic data
metagenomics bwa bowtie genomics alignment
4.4 years ago by Antonio Camargo ▴ 160
3
votes
2
replies
816
views
RNA-Seq quantification of a heterozygous individual with a short deletion
RNA-Seq
updated 4.6 years ago by ▴ 700 • written 4.6 years ago by ▴ 160
1
vote
3
replies
2.1k
views
Transforming stranded RNA-Seq libraries in unstranded
rna-seq stranded
updated 5.8 years ago by 20 • written 8.0 years ago by ▴ 160
2
votes
6
replies
1.3k
views
How should a query a gene type in multiple genomes?
query search
updated 6.0 years ago by 141k • written 6.0 years ago by ▴ 160
0
votes
4
replies
3.8k
views
Insert size in RNA-Seq library
rna-seq
updated 6.6 years ago by ▴ 170 • written 8.0 years ago by ▴ 160
1
vote
7
replies
2.7k
views
Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth RNA-Seq differential-expression
6.6 years ago by Antonio Camargo ▴ 160
3
votes
7
replies
3.5k
views
Microbial diversity analysis using whole-genome metagenomic data
metagenome taxonomy mothur qiime
updated 6.7 years ago by 20k • written 6.7 years ago by ▴ 160
20
votes
9
replies
12k
views
7 follow
How to create 'gene' and 'transcript' entries in a GTF containing only exons
cufflinks gtf
updated 6.8 years ago by ▴ 80 • written 7.4 years ago by ▴ 160
3
votes
1
reply
1.5k
views
DE analysis of low-expression transcripts
RNA-Seq expression deseq2 edgeR sleuth
updated 7.3 years ago by 104k • written 7.3 years ago by ▴ 160
0
votes
0
replies
1.4k
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Using Stitch MAF blocks withou Galaxy
maf stitch galaxy
7.5 years ago by Antonio Camargo ▴ 160
1
vote
2
replies
1.7k
views
Cufflinks displaying "WARNING: Multi-Hit not found"
multi-hit warning cufflinks rna-seq
7.9 years ago by Antonio Camargo ▴ 160
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