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5
votes
4
replies
7.5k
views
Trouble installing cd-hit
cd-hit
updated 2.9 years ago by
Md
▴ 10 • written 8.0 years ago by
nlehmann
▴ 150
0
votes
0
replies
868
views
Comment:
Comment: Plot assigned / unassigned reads distance to 3'UTR
3.4 years ago by
nlehmann
▴ 150
0
votes
2
replies
868
views
Plot assigned / unassigned reads distance to 3'UTR
bedtools
RNA-seq
closest
3.4 years ago by
nlehmann
▴ 150
0
votes
1
reply
921
views
How to interpret a single cell RNA-seq experiment with 10 times less cells but correct number of reads ?
single-cell
10xGenomics
cellranger
3.9 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.4k
views
Comment:
C: IGV create genome: cytoband not working
4.1 years ago by
nlehmann
▴ 150
0
votes
2
replies
1.4k
views
IGV create genome: cytoband not working
IGV
RNA-Seq
updated 4.1 years ago by
jinkai0621
• 0 • written 5.2 years ago by
nlehmann
▴ 150
4
votes
7
replies
2.2k
views
Detect discrepancies in GFF files
RNA-Seq
Gffread
AGAT
UCSC
updated 4.5 years ago by
Biostar
20 • written 4.5 years ago by
nlehmann
▴ 150
0
votes
1
reply
2.8k
views
Comment:
C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
4.5 years ago by
nlehmann
▴ 150
0
votes
1
reply
2.8k
views
Comment:
C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
4.5 years ago by
nlehmann
▴ 150
2
votes
7
replies
2.8k
views
Is there a way to change gene_id in a GTF file where gene_id is actually a gene_name (and multiple genes have the same gene names) ?
RNA-Seq
assembly
UCSC
4.5 years ago by
nlehmann
▴ 150
0
votes
0
replies
2.8k
views
Comment:
C: Best way to change gene_id in a GTF file where gene_id is identical to gene_name
4.5 years ago by
nlehmann
▴ 150
0
votes
1
reply
2.2k
views
Comment:
C: Detect discrepancies in GFF files
4.5 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.1k
views
Comment:
C: Comparisons of genes coordinates
4.5 years ago by
nlehmann
▴ 150
0
votes
0
replies
2.2k
views
Comment:
C: Detect discrepancies in GFF files
4.5 years ago by
nlehmann
▴ 150
1
vote
0
replies
2.2k
views
Comment:
C: Detect discrepancies in GFF files
4.5 years ago by
nlehmann
▴ 150
0
votes
2
replies
1.1k
views
Comparisons of genes coordinates
gene
RNA-Seq
4.5 years ago by
nlehmann
▴ 150
0
votes
0
replies
4.4k
views
Comment:
C: Fraction reads in cells CELLRANGER
4.5 years ago by
nlehmann
▴ 150
6
votes
5
replies
3.0k
views
UCSC track hub: how to best include a GTF / GFF file
UCSC
trackhub
annotation
updated 4.6 years ago by
Luis Nassar
▴ 670 • written 4.6 years ago by
nlehmann
▴ 150
1
vote
0
replies
3.0k
views
Comment:
C: UCSC track hub: how to best include a GTF / GFF file
4.6 years ago by
nlehmann
▴ 150
0
votes
0
replies
3.0k
views
Comment:
C: UCSC track hub: how to best include a GTF / GFF file
4.6 years ago by
nlehmann
▴ 150
3
votes
0
replies
13k
views
Comment:
C: How to create 'gene' and 'transcript' entries in a GTF containing only exons
4.6 years ago by
nlehmann
▴ 150
1
vote
0
replies
1.3k
views
RSeQC infer_experiment output interpretation to infer library type fr-firstand or fr-secondstrand
RNA-Seq
RSeQC
annotation
4.6 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.8k
views
Answer:
A: stringtie coverage -c parameter?
4.6 years ago by
nlehmann
▴ 150
0
votes
5
replies
1.4k
views
RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
RNA-Seq
Nanopore
Illumina
assembly
updated 4.6 years ago by
colindaven
7.0k • written 4.6 years ago by
nlehmann
▴ 150
0
votes
0
replies
640
views
Comment:
C: How to read the Fastq files?
4.6 years ago by
nlehmann
▴ 150
1
vote
0
replies
4.6k
views
Comment:
C: Why some rows are deleted from the heat map created
4.6 years ago by
nlehmann
▴ 150
0
votes
1
reply
4.6k
views
Comment:
C: Why some rows are deleted from the heat map created
4.6 years ago by
nlehmann
▴ 150
1
vote
1
reply
4.1k
views
Answer:
A: question about 10X sc-RNA-seq
4.6 years ago by
nlehmann
▴ 150
1
vote
0
replies
2.8k
views
Answer:
Answer: Filter fasta sequences based on a list with grep or BBmap
updated 21 months ago by
Ram
44k • written 4.6 years ago by
nlehmann
▴ 150
1
vote
1
reply
1.6k
views
Loading GTF with GenomicFeatures makeTxDb gives an empty TxDb object
gffcompare
genomicfeatures
maketxdb
RNA-Seq
4.6 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.4k
views
Comment:
C: RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
4.6 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.4k
views
Comment:
C: RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
4.6 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.7k
views
Comment:
C: How to recover 5'UTR, CDS, start codon after GTF merging ?
4.7 years ago by
nlehmann
▴ 150
0
votes
2
replies
1.7k
views
How to recover 5'UTR, CDS, start codon after GTF merging ?
gffcompare
cuffmerge
stringtie
annotation
gtf
4.7 years ago by
nlehmann
▴ 150
0
votes
1
reply
2.3k
views
Comment:
C: Stringtie2: how to interpret conflicts between results
4.8 years ago by
nlehmann
▴ 150
0
votes
3
replies
2.3k
views
Stringtie2: how to interpret conflicts between results
RNA-Seq
long-reads
de novo annotation
stringtie
updated 4.8 years ago by
Kevin Blighe
88k • written 4.8 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.3k
views
Comment:
C: Difference between UCSC annotation files
4.8 years ago by
nlehmann
▴ 150
5
votes
2
replies
1.3k
views
Difference between UCSC annotation files
UCSC
assembly
updated 4.8 years ago by
danielschmelter
▴ 170 • written 4.8 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.1k
views
Comment:
C: Simple Workflow of Mirna Diffrential expression in galaxy or in ubuntu
5.2 years ago by
nlehmann
▴ 150
0
votes
0
replies
3.7k
views
Comment:
C: bulk analysis by seurat
5.2 years ago by
nlehmann
▴ 150
0
votes
0
replies
1.8k
views
Steps for molecular docking of antibodies / antigens
docking
immunology
7.9 years ago by
nlehmann
▴ 150
1
vote
5
replies
4.1k
views
Plink : how to filter outliers for GWAS ?
GWAS
Plink
8.0 years ago by
nlehmann
▴ 150
0
votes
1
reply
4.1k
views
Comment:
C: Plink : how to filter outliers for GWAS ?
8.0 years ago by
nlehmann
▴ 150
0
votes
0
replies
7.5k
views
Comment:
C: Trouble installing cd-hit
8.0 years ago by
nlehmann
▴ 150
4
votes
1
reply
5.7k
views
On what condition(s) should a K-medoids algorithms stop when clustering organisms ?
PAM
Clustering
K-medoids
Unsupervised learning
updated 8.6 years ago by
Jean-Karim Heriche
27k • written 8.6 years ago by
nlehmann
▴ 150
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