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5
votes
4
replies
8.6k
views
Trouble installing cd-hit
cd-hit
updated 3.9 years ago by ▴ 10 • written 9.0 years ago by ▴ 150
0
votes
0
replies
1.2k
views
Comment: Comment: Plot assigned / unassigned reads distance to 3'UTR
4.3 years ago by nlehmann ▴ 150
0
votes
2
replies
1.2k
views
Plot assigned / unassigned reads distance to 3'UTR
bedtools RNA-seq closest
4.3 years ago by nlehmann ▴ 150
0
votes
1
reply
1.2k
views
How to interpret a single cell RNA-seq experiment with 10 times less cells but correct number of reads ?
single-cell 10xGenomics cellranger
4.8 years ago by nlehmann ▴ 150
0
votes
0
replies
1.8k
views
Comment: C: IGV create genome: cytoband not working
5.1 years ago by nlehmann ▴ 150
0
votes
2
replies
1.8k
views
IGV create genome: cytoband not working
IGV RNA-Seq
updated 5.1 years ago by • 0 • written 6.2 years ago by ▴ 150
4
votes
7
replies
2.9k
views
Detect discrepancies in GFF files
RNA-Seq Gffread AGAT UCSC
updated 5.4 years ago by 20 • written 5.4 years ago by ▴ 150
0
votes
1
reply
3.5k
views
Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
5.4 years ago by nlehmann ▴ 150
0
votes
1
reply
3.5k
views
Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
5.4 years ago by nlehmann ▴ 150
2
votes
7
replies
3.5k
views
Is there a way to change gene_id in a GTF file where gene_id is actually a gene_name (and multiple genes have the same gene names) ?
RNA-Seq assembly UCSC
5.4 years ago by nlehmann ▴ 150
0
votes
0
replies
3.5k
views
Comment: C: Best way to change gene_id in a GTF file where gene_id is identical to gene_name
5.4 years ago by nlehmann ▴ 150
0
votes
1
reply
2.9k
views
Comment: C: Detect discrepancies in GFF files
5.4 years ago by nlehmann ▴ 150
0
votes
0
replies
1.4k
views
Comment: C: Comparisons of genes coordinates
5.4 years ago by nlehmann ▴ 150
0
votes
0
replies
2.9k
views
Comment: C: Detect discrepancies in GFF files
5.4 years ago by nlehmann ▴ 150
1
vote
0
replies
2.9k
views
Comment: C: Detect discrepancies in GFF files
5.4 years ago by nlehmann ▴ 150
0
votes
2
replies
1.4k
views
Comparisons of genes coordinates
gene RNA-Seq
5.4 years ago by nlehmann ▴ 150
0
votes
0
replies
5.2k
views
Comment: C: Fraction reads in cells CELLRANGER
5.5 years ago by nlehmann ▴ 150
6
votes
5
replies
4.4k
views
UCSC track hub: how to best include a GTF / GFF file
UCSC trackhub annotation
updated 5.5 years ago by ▴ 670 • written 5.5 years ago by ▴ 150
1
vote
0
replies
4.4k
views
Comment: C: UCSC track hub: how to best include a GTF / GFF file
5.5 years ago by nlehmann ▴ 150
0
votes
0
replies
4.4k
views
Comment: C: UCSC track hub: how to best include a GTF / GFF file
5.5 years ago by nlehmann ▴ 150
3
votes
0
replies
15k
views
Comment: C: How to create 'gene' and 'transcript' entries in a GTF containing only exons
5.5 years ago by nlehmann ▴ 150
1
vote
0
replies
1.7k
views
RSeQC infer_experiment output interpretation to infer library type fr-firstand or fr-secondstrand
RNA-Seq RSeQC annotation
5.5 years ago by nlehmann ▴ 150
0
votes
0
replies
2.4k
views
Answer: A: stringtie coverage -c parameter?
5.5 years ago by nlehmann ▴ 150
0
votes
5
replies
2.1k
views
RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
RNA-Seq Nanopore Illumina assembly
updated 5.6 years ago by 8.1k • written 5.6 years ago by ▴ 150
0
votes
0
replies
946
views
Comment: C: How to read the Fastq files?
5.6 years ago by nlehmann ▴ 150
1
vote
0
replies
6.1k
views
Comment: C: Why some rows are deleted from the heat map created
5.6 years ago by nlehmann ▴ 150
0
votes
1
reply
6.1k
views
Comment: C: Why some rows are deleted from the heat map created
5.6 years ago by nlehmann ▴ 150
1
vote
1
reply
5.3k
views
Answer: A: question about 10X sc-RNA-seq
5.6 years ago by nlehmann ▴ 150
1
vote
0
replies
3.6k
views
Answer: Answer: Filter fasta sequences based on a list with grep or BBmap
updated 2.8 years ago by 45k • written 5.6 years ago by ▴ 150
1
vote
1
reply
1.9k
views
Loading GTF with GenomicFeatures makeTxDb gives an empty TxDb object
gffcompare genomicfeatures maketxdb RNA-Seq
5.6 years ago by nlehmann ▴ 150
0
votes
0
replies
2.1k
views
Comment: C: RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
5.6 years ago by nlehmann ▴ 150
0
votes
0
replies
2.1k
views
Comment: C: RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
5.6 years ago by nlehmann ▴ 150
0
votes
0
replies
2.1k
views
Comment: C: How to recover 5'UTR, CDS, start codon after GTF merging ?
5.7 years ago by nlehmann ▴ 150
0
votes
2
replies
2.1k
views
How to recover 5'UTR, CDS, start codon after GTF merging ?
gffcompare cuffmerge stringtie annotation gtf
5.7 years ago by nlehmann ▴ 150
0
votes
1
reply
3.0k
views
Comment: C: Stringtie2: how to interpret conflicts between results
5.7 years ago by nlehmann ▴ 150
0
votes
3
replies
3.0k
views
Stringtie2: how to interpret conflicts between results
RNA-Seq long-reads de novo annotation stringtie
updated 5.7 years ago by ★ 90k • written 5.8 years ago by ▴ 150
0
votes
0
replies
1.9k
views
Comment: C: Difference between UCSC annotation files
5.8 years ago by nlehmann ▴ 150
5
votes
2
replies
1.9k
views
Difference between UCSC annotation files
UCSC assembly
updated 5.8 years ago by ▴ 200 • written 5.8 years ago by ▴ 150
0
votes
0
replies
1.4k
views
Comment: C: Simple Workflow of Mirna Diffrential expression in galaxy or in ubuntu
6.2 years ago by nlehmann ▴ 150
0
votes
0
replies
4.2k
views
Comment: C: bulk analysis by seurat
6.2 years ago by nlehmann ▴ 150
0
votes
0
replies
2.1k
views
Steps for molecular docking of antibodies / antigens
docking immunology
8.9 years ago by nlehmann ▴ 150
1
vote
5
replies
4.6k
views
Plink : how to filter outliers for GWAS ?
GWAS Plink
9.0 years ago by nlehmann ▴ 150
0
votes
1
reply
4.6k
views
Comment: C: Plink : how to filter outliers for GWAS ?
9.0 years ago by nlehmann ▴ 150
0
votes
0
replies
8.6k
views
Comment: C: Trouble installing cd-hit
9.0 years ago by nlehmann ▴ 150
4
votes
1
reply
6.3k
views
On what condition(s) should a K-medoids algorithms stop when clustering organisms ?
PAM Clustering K-medoids Unsupervised learning
updated 9.6 years ago by 27k • written 9.6 years ago by ▴ 150
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