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5
votes
4
replies
6.1k
views
Trouble installing cd-hit
cd-hit
updated 17 months ago by ▴ 10 • written 6.5 years ago by ▴ 140
0
votes
0
replies
534
views
Comment: Comment: Plot assigned / unassigned reads distance to 3'UTR
22 months ago by nlehmann ▴ 140
0
votes
2
replies
534
views
Plot assigned / unassigned reads distance to 3'UTR
bedtools RNA-seq closest
22 months ago by nlehmann ▴ 140
0
votes
1
reply
696
views
How to interpret a single cell RNA-seq experiment with 10 times less cells but correct number of reads ?
single-cell 10xGenomics cellranger
2.4 years ago by nlehmann ▴ 140
0
votes
0
replies
1.1k
views
Comment: C: IGV create genome: cytoband not working
2.6 years ago by nlehmann ▴ 140
0
votes
2
replies
1.1k
views
IGV create genome: cytoband not working
IGV RNA-Seq
updated 2.6 years ago by • 0 • written 3.7 years ago by ▴ 140
4
votes
7
replies
1.5k
views
Detect discrepancies in GFF files
RNA-Seq Gffread AGAT UCSC
updated 2.9 years ago by 20 • written 3.0 years ago by ▴ 140
0
votes
1
reply
1.8k
views
Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
3.0 years ago by nlehmann ▴ 140
0
votes
1
reply
1.8k
views
Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
3.0 years ago by nlehmann ▴ 140
2
votes
7
replies
1.8k
views
Is there a way to change gene_id in a GTF file where gene_id is actually a gene_name (and multiple genes have the same gene names) ?
RNA-Seq assembly UCSC
3.0 years ago by nlehmann ▴ 140
0
votes
0
replies
1.8k
views
Comment: C: Best way to change gene_id in a GTF file where gene_id is identical to gene_name
3.0 years ago by nlehmann ▴ 140
0
votes
1
reply
1.5k
views
Comment: C: Detect discrepancies in GFF files
3.0 years ago by nlehmann ▴ 140
0
votes
0
replies
838
views
Comment: C: Comparisons of genes coordinates
3.0 years ago by nlehmann ▴ 140
0
votes
0
replies
1.5k
views
Comment: C: Detect discrepancies in GFF files
3.0 years ago by nlehmann ▴ 140
1
vote
0
replies
1.5k
views
Comment: C: Detect discrepancies in GFF files
3.0 years ago by nlehmann ▴ 140
0
votes
2
replies
838
views
Comparisons of genes coordinates
gene RNA-Seq
3.0 years ago by nlehmann ▴ 140
0
votes
0
replies
3.4k
views
Comment: C: Fraction reads in cells CELLRANGER
3.0 years ago by nlehmann ▴ 140
4
votes
5
replies
1.7k
views
UCSC track hub: how to best include a GTF / GFF file
UCSC trackhub annotation
updated 3.0 years ago by ▴ 620 • written 3.0 years ago by ▴ 140
1
vote
0
replies
1.7k
views
Comment: C: UCSC track hub: how to best include a GTF / GFF file
3.0 years ago by nlehmann ▴ 140
0
votes
0
replies
1.7k
views
Comment: C: UCSC track hub: how to best include a GTF / GFF file
3.0 years ago by nlehmann ▴ 140
3
votes
0
replies
11k
views
Comment: C: How to create 'gene' and 'transcript' entries in a GTF containing only exons
3.0 years ago by nlehmann ▴ 140
1
vote
0
replies
975
views
RSeQC infer_experiment output interpretation to infer library type fr-firstand or fr-secondstrand
RNA-Seq RSeQC annotation
3.0 years ago by nlehmann ▴ 140
0
votes
0
replies
1.2k
views
Answer: A: stringtie coverage -c parameter?
3.0 years ago by nlehmann ▴ 140
0
votes
5
replies
976
views
RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
RNA-Seq Nanopore Illumina assembly
updated 3.1 years ago by 4.8k • written 3.1 years ago by ▴ 140
0
votes
0
replies
450
views
Comment: C: How to read the Fastq files?
3.1 years ago by nlehmann ▴ 140
1
vote
0
replies
2.9k
views
Comment: C: Why some rows are deleted from the heat map created
3.1 years ago by nlehmann ▴ 140
0
votes
1
reply
2.9k
views
Comment: C: Why some rows are deleted from the heat map created
3.1 years ago by nlehmann ▴ 140
1
vote
1
reply
2.9k
views
Answer: A: question about 10X sc-RNA-seq
3.1 years ago by nlehmann ▴ 140
1
vote
0
replies
1.8k
views
Answer: Answer: Filter fasta sequences based on a list with grep or BBmap
updated 3 months ago by 39k • written 3.1 years ago by ▴ 140
1
vote
1
reply
1.2k
views
Loading GTF with GenomicFeatures makeTxDb gives an empty TxDb object
gffcompare genomicfeatures maketxdb RNA-Seq
3.1 years ago by nlehmann ▴ 140
0
votes
0
replies
976
views
Comment: C: RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
3.1 years ago by nlehmann ▴ 140
0
votes
0
replies
976
views
Comment: C: RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
3.1 years ago by nlehmann ▴ 140
0
votes
0
replies
1.2k
views
Comment: C: How to recover 5'UTR, CDS, start codon after GTF merging ?
3.2 years ago by nlehmann ▴ 140
0
votes
2
replies
1.2k
views
How to recover 5'UTR, CDS, start codon after GTF merging ?
gffcompare cuffmerge stringtie annotation gtf
3.2 years ago by nlehmann ▴ 140
0
votes
1
reply
1.7k
views
Comment: C: Stringtie2: how to interpret conflicts between results
3.2 years ago by nlehmann ▴ 140
0
votes
3
replies
1.7k
views
Stringtie2: how to interpret conflicts between results
RNA-Seq long-reads de novo annotation stringtie
updated 3.2 years ago by 85k • written 3.3 years ago by ▴ 140
0
votes
0
replies
877
views
Comment: C: Difference between UCSC annotation files
3.3 years ago by nlehmann ▴ 140
5
votes
2
replies
877
views
Difference between UCSC annotation files
UCSC assembly
updated 3.3 years ago by ▴ 130 • written 3.3 years ago by ▴ 140
0
votes
0
replies
856
views
Comment: C: Simple Workflow of Mirna Diffrential expression in galaxy or in ubuntu
3.7 years ago by nlehmann ▴ 140
0
votes
0
replies
3.0k
views
Comment: C: bulk analysis by seurat
3.7 years ago by nlehmann ▴ 140
0
votes
0
replies
1.6k
views
Steps for molecular docking of antibodies / antigens
docking immunology
6.4 years ago by nlehmann ▴ 140
1
vote
5
replies
3.6k
views
Plink : how to filter outliers for GWAS ?
GWAS Plink
6.5 years ago by nlehmann ▴ 140
0
votes
1
reply
3.6k
views
Comment: C: Plink : how to filter outliers for GWAS ?
6.5 years ago by nlehmann ▴ 140
0
votes
0
replies
6.1k
views
Comment: C: Trouble installing cd-hit
6.5 years ago by nlehmann ▴ 140
4
votes
1
reply
5.0k
views
On what condition(s) should a K-medoids algorithms stop when clustering organisms ?
PAM Clustering K-medoids Unsupervised learning
updated 7.1 years ago by 26k • written 7.1 years ago by ▴ 140
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