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Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
11.7 years ago by Ryan Thompson ★ 3.6k
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5.1k
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Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
11.7 years ago by Ryan Thompson ★ 3.6k
0
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1
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5.1k
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Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
11.7 years ago by Ryan Thompson ★ 3.6k
0
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0
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5.1k
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Comment: C: Modeling Chip-Seq Background Using Edger'S Glm Functionality?
11.7 years ago by Ryan Thompson ★ 3.6k
0
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0
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8.1k
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Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
11.7 years ago by Ryan Thompson ★ 3.6k
0
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1
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8.1k
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Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
11.7 years ago by Ryan Thompson ★ 3.6k
0
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1
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8.1k
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Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
11.7 years ago by Ryan Thompson ★ 3.6k
0
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0
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8.1k
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Comment: C: Chipseq Background Subtraction For Count-Based Differential Binding Methods?
11.7 years ago by Ryan Thompson ★ 3.6k
0
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0
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4.0k
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Answer: A: Retrieve Pairs Sequences By Id Form Sam Or Bam File
11.8 years ago by Ryan Thompson ★ 3.6k
2
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0
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41k
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Comment: C: Bowtie Building Index Issue
11.9 years ago by Ryan Thompson ★ 3.6k
0
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1
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4.1k
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Comment: C: Annotation In Gff3
11.9 years ago by Ryan Thompson ★ 3.6k
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1
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4.1k
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Comment: C: Annotation In Gff3
11.9 years ago by Ryan Thompson ★ 3.6k
0
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1
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4.1k
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Comment: C: Annotation In Gff3
11.9 years ago by Ryan Thompson ★ 3.6k
0
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1
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4.1k
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Comment: C: Annotation In Gff3
11.9 years ago by Ryan Thompson ★ 3.6k
0
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1
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4.1k
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Answer: A: Annotation In Gff3
11.9 years ago by Ryan Thompson ★ 3.6k
2
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0
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5.2k
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Answer: A: Can I Pre-Build The Shared Transcriptome Index For A Series Of Tophat Runs?
11.9 years ago by Ryan Thompson ★ 3.6k
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0
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12k
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Comment: C: Sequencing And Strands
11.9 years ago by Ryan Thompson ★ 3.6k
2
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0
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2.5k
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Answer: A: How Many Chromosomes Have To Be Annotated For Human Beings?
11.9 years ago by Ryan Thompson ★ 3.6k
10
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12k
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Answer: A: Sequencing And Strands
11.9 years ago by Ryan Thompson ★ 3.6k
2
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0
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3.3k
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Answer: A: What Is A "Coverage Island" In The Context Of Tophat?
11.9 years ago by Ryan Thompson ★ 3.6k
1
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2
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24k
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Comment: C: Deseq, Edger And Cuffdiff - Different Result
12.0 years ago by Ryan Thompson ★ 3.6k
0
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0
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3.5k
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Answer: A: Cufflinks Or Cuffdiff (Or Both) For Frag-Bias-Correct?
12.0 years ago by Ryan Thompson ★ 3.6k
1
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0
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3.7k
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Answer: A: Get Snps, Indels From Biopython Blast Parser
12.0 years ago by Ryan Thompson ★ 3.6k
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1
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22k
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Comment: C: Blast Two Sequences
12.0 years ago by Ryan Thompson ★ 3.6k
10
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1
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22k
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Answer: A: Blast Two Sequences
12.0 years ago by Ryan Thompson ★ 3.6k
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1
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3.5k
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Comment: C: Computing Relative Coordinates Of One Bioconductor Granges Object To Another?
12.1 years ago by Ryan Thompson ★ 3.6k
0
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1
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3.5k
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Comment: C: Computing Relative Coordinates Of One Bioconductor Granges Object To Another?
12.1 years ago by Ryan Thompson ★ 3.6k
2
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1
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2.0k
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Answer: A: Verifying Next Gen Seq Source
12.1 years ago by Ryan Thompson ★ 3.6k
4
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5
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3.5k
views
Computing Relative Coordinates Of One Bioconductor Granges Object To Another?
bioconductor coordinates
updated 12.1 years ago by ★ 1.5k • written 12.1 years ago by ★ 3.6k
0
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0
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9.2k
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Comment: C: Why Does Macs Use A Genome Size Of 2.7 Billion Instead Of 3 Billion For Human?
12.1 years ago by Ryan Thompson ★ 3.6k
0
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0
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9.2k
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Comment: C: Why Does Macs Use A Genome Size Of 2.7 Billion Instead Of 3 Billion For Human?
12.1 years ago by Ryan Thompson ★ 3.6k
26
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9
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9.2k
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Why Does Macs Use A Genome Size Of 2.7 Billion Instead Of 3 Billion For Human?
macs genome
updated 12.1 years ago by ★ 2.0k • written 12.1 years ago by ★ 3.6k
0
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0
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7.2k
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Comment: C: Cuffdiff Is Taking Forever. Can I Parallelize It?
12.2 years ago by Ryan Thompson ★ 3.6k
1
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1
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6.4k
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Answer: A: Is It Necessary To Do Read Trimming For Rna-Seq Data?
12.2 years ago by Ryan Thompson ★ 3.6k
29
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6
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6.9k
views
6 follow
Is There Any Reason To Do De Novo Transcript Assembly If A Reference Is Available?
rna denovo trinity cufflinks
updated 12.2 years ago by ★ 1.5k • written 12.2 years ago by ★ 3.6k
0
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0
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6.4k
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Comment: C: Why Does Chip-Seq Data Have Lots Of Reverse-Complement Pairs Of Reads?
12.2 years ago by Ryan Thompson ★ 3.6k
0
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0
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7.0k
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Answer: A: Reasons For Observing Non-Reference Allele In Everyone As Homozygous Genotype
12.2 years ago by Ryan Thompson ★ 3.6k
0
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0
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10k
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Comment: C: Which Aligner Should I Use For Mapping Bacterial Rna-Seq Data
12.2 years ago by Ryan Thompson ★ 3.6k
5
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2
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10k
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Answer: A: Which Aligner Should I Use For Mapping Bacterial Rna-Seq Data
12.2 years ago by Ryan Thompson ★ 3.6k
0
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0
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6.4k
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Comment: C: Why Does Chip-Seq Data Have Lots Of Reverse-Complement Pairs Of Reads?
12.2 years ago by Ryan Thompson ★ 3.6k
1
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0
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6.4k
views
Comment: C: Why Does Chip-Seq Data Have Lots Of Reverse-Complement Pairs Of Reads?
12.2 years ago by Ryan Thompson ★ 3.6k
7
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6
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5.6k
views
How Can I Identify Orthologous Contigs Between Two De Novo Transcriptome Assemblies?
transcriptome assembly denovo trinity orthologues
updated 12.5 years ago by ★ 2.5k • written 12.5 years ago by ★ 3.6k
0
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0
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7.0k
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Comment: C: Blast_Formatter: How To Choose Which Database To Read From?
12.5 years ago by Ryan Thompson ★ 3.6k
0
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0
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8.9k
views
Comment: C: K-Mer Correction In Rna-Seq Data For Transcriptome Assembly?
12.5 years ago by Ryan Thompson ★ 3.6k
2
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0
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38k
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Comment: C: Meaning Of Fpkm Value Used By Cufflinks
12.7 years ago by Ryan Thompson ★ 3.6k
1
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0
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5.6k
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Comment: C: Intron Retention And Alternative 5'3' Splice Site Identification
12.8 years ago by Ryan Thompson ★ 3.6k
1
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0
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6.4k
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Comment: C: Is There A Precise Specification For Fasta Files?
12.8 years ago by Ryan Thompson ★ 3.6k
0
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0
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7.2k
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Comment: C: Cuffdiff Is Taking Forever. Can I Parallelize It?
12.8 years ago by Ryan Thompson ★ 3.6k
0
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0
replies
4.4k
views
Answer: A: Variable Length Reads In De Novo Assembly
12.8 years ago by Ryan Thompson ★ 3.6k
22
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8
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8.6k
views
What Can I Do With Rna-Seq Samples With Major Genomic Contamination?
rna
updated 12.8 years ago by 54k • written 12.9 years ago by ★ 3.6k
198 results • Page 3 of 4
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