Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
4
votes
5
replies
4.3k
views
High number of secondary alignments with HISAT2
RNA-Seq
updated 7.5 years ago by 20 • written 7.6 years ago by ▴ 760
0
votes
1
reply
28k
views
Comment: C: Is there a tool that sorts gtf files?
7.5 years ago by JJ ▴ 760
1
vote
1
reply
28k
views
Comment: C: Is there a tool that sorts gtf files?
7.5 years ago by JJ ▴ 760
1
vote
1
reply
1.2k
views
Predicted target genes - which tools are the best to use?
genome
updated 7.5 years ago by 89k • written 7.5 years ago by ▴ 760
0
votes
0
replies
1.4k
views
Comment: C: Identify lncRNAs - search for tools
7.5 years ago by JJ ▴ 760
1
vote
2
replies
1.4k
views
Identify lncRNAs - search for tools
RNA-Seq
updated 7.5 years ago by ▴ 160 • written 7.5 years ago by ▴ 760
0
votes
0
replies
15k
views
Comment: C: annotation of SV (structural variants)
7.6 years ago by JJ ▴ 760
0
votes
0
replies
7.7k
views
Comment: C: Creating Hisat2 Index
7.6 years ago by JJ ▴ 760
0
votes
1
reply
7.7k
views
Comment: C: Creating Hisat2 Index
7.6 years ago by JJ ▴ 760
0
votes
1
reply
4.3k
views
Comment: C: High number of secondary alignments with HISAT2
7.6 years ago by JJ ▴ 760
0
votes
1
reply
4.3k
views
Comment: C: High number of secondary alignments with HISAT2
7.6 years ago by JJ ▴ 760
0
votes
0
replies
4.7k
views
Answer: A: Which tool is best for Annotation of human vcf files (Snpeff or VEP or Annovar)
7.6 years ago by JJ ▴ 760
1
vote
1
reply
18k
views
Comment: C: Which strand specific option need to be used with HISAT2?
7.6 years ago by JJ ▴ 760
0
votes
1
reply
18k
views
Comment: C: Which strand specific option need to be used with HISAT2?
7.6 years ago by JJ ▴ 760
0
votes
0
replies
18k
views
Comment: C: Which strand specific option need to be used with HISAT2?
7.6 years ago by JJ ▴ 760
0
votes
1
reply
18k
views
Comment: C: Which strand specific option need to be used with HISAT2?
7.6 years ago by JJ ▴ 760
0
votes
2
replies
18k
views
Comment: C: Which strand specific option need to be used with HISAT2?
7.6 years ago by JJ ▴ 760
1
vote
0
replies
4.9k
views
Answer: A: STAR analysis and alignment
7.6 years ago by JJ ▴ 760
1
vote
1
reply
18k
views
Comment: C: Which strand specific option need to be used with HISAT2?
7.6 years ago by JJ ▴ 760
3
votes
1
reply
18k
views
Answer: A: Which strand specific option need to be used with HISAT2?
7.6 years ago by JJ ▴ 760
0
votes
0
replies
2.8k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
7.6 years ago by JJ ▴ 760
0
votes
1
reply
2.8k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
7.6 years ago by JJ ▴ 760
0
votes
0
replies
2.8k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
7.6 years ago by JJ ▴ 760
0
votes
0
replies
2.8k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
7.6 years ago by JJ ▴ 760
0
votes
1
reply
2.8k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
7.6 years ago by JJ ▴ 760
0
votes
2
replies
2.8k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
7.6 years ago by JJ ▴ 760
5
votes
10
replies
2.8k
views
Is the RNA-seq library indeed strand-specific?
RNA-Seq
updated 7.6 years ago by 105k • written 7.6 years ago by ▴ 760
2
votes
1
reply
3.1k
views
Comment: C: best way to do joint genotyping
7.6 years ago by JJ ▴ 760
0
votes
0
replies
6.2k
views
Answer: A: Using gVCF mode in HaplotypeCaller ( GATK4)
7.6 years ago by JJ ▴ 760
0
votes
1
reply
1.4k
views
Answer: A: Sample data for RNA STAR
7.6 years ago by JJ ▴ 760
2
votes
1
reply
15k
views
Answer: A: annotation of SV (structural variants)
7.6 years ago by JJ ▴ 760
0
votes
1
reply
13k
views
Comment: C: RSeQC Output from infer_experiment.py - what does it mean?
7.6 years ago by JJ ▴ 760
0
votes
1
reply
13k
views
Comment: C: RSeQC Output from infer_experiment.py - what does it mean?
7.6 years ago by JJ ▴ 760
32
votes
7
replies
13k
views
RSeQC Output from infer_experiment.py - what does it mean?
RNA-Seq
updated 7.7 years ago by 105k • written 7.7 years ago by ▴ 760
1
vote
2
replies
4.1k
views
Tuning of the HISAT2 parameters --mp and --sp
RNA-Seq
7.7 years ago by JJ ▴ 760
1
vote
1
reply
12k
views
Answer: A: Too many differentially expressed genes in RNA-seq?
7.7 years ago by JJ ▴ 760
2
votes
3
replies
3.2k
views
How to access if RNA-seq data is strand-specific?
RNA-Seq
updated 7.7 years ago by 15k • written 7.7 years ago by ▴ 760
0
votes
0
replies
3.8k
views
Comment: C: How about my parallel bwa+gatk pipeline?
7.8 years ago by JJ ▴ 760
0
votes
0
replies
3.8k
views
Answer: A: How about my parallel bwa+gatk pipeline?
7.8 years ago by JJ ▴ 760
0
votes
0
replies
7.0k
views
Comment: C: Joint genotyping using GATK - how important is it?
7.8 years ago by JJ ▴ 760
0
votes
0
replies
2.8k
views
Comment: C: SNP calling using cancer cell lines
7.8 years ago by JJ ▴ 760
0
votes
1
reply
2.8k
views
Comment: C: SNP calling using cancer cell lines
7.8 years ago by JJ ▴ 760
4
votes
5
replies
2.8k
views
SNP calling using cancer cell lines
SNP GATK
updated 7.8 years ago by 27k • written 7.8 years ago by ▴ 760
0
votes
0
replies
2.8k
views
Comment: C: SNP calling using cancer cell lines
7.8 years ago by JJ ▴ 760
0
votes
0
replies
9.0k
views
Comment: C: Clustering data - data transformation (log2) highly improves clustering but why?
7.8 years ago by JJ ▴ 760
0
votes
1
reply
9.0k
views
Comment: C: Clustering data - data transformation (log2) highly improves clustering but why?
7.8 years ago by JJ ▴ 760
2
votes
4
replies
9.0k
views
Clustering data - data transformation (log2) highly improves clustering but why?
clustering Elisa data transformation
7.8 years ago by JJ ▴ 760
0
votes
1
reply
7.0k
views
Comment: C: Joint genotyping using GATK - how important is it?
7.8 years ago by JJ ▴ 760
0
votes
0
replies
7.0k
views
Comment: C: Joint genotyping using GATK - how important is it?
7.8 years ago by JJ ▴ 760
17
votes
14
replies
7.0k
views
Joint genotyping using GATK - how important is it?
SNP sequencing
updated 7.8 years ago by 13k • written 7.8 years ago by ▴ 760
164 results • Page 3 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6