Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
18
votes
10
replies
10k
views
7 follow
Automatic Outlier Detection for RNA-seq data
RNA-Seq outlier rrcov
updated 20 months ago by ▴ 120 • written 5.6 years ago by ▴ 640
1
vote
0
replies
7.8k
views
Comment: C: Correlation heatmaps: use correlation as clustering distance or not?
2.2 years ago by JJ ▴ 640
0
votes
0
replies
3.3k
views
Comment: C: Tuning of the HISAT2 parameters --mp and --sp
2.2 years ago by JJ ▴ 640
0
votes
3
replies
3.1k
views
VCF file (annotated with snpeff) to MAF
genome sequencing
updated 3.1 years ago by • 0 • written 4.4 years ago by ▴ 640
0
votes
1
reply
424
views
Extract transcripts lacking a poly(A) tail
genome
updated 3.2 years ago by 17k • written 3.2 years ago by ▴ 640
27
votes
20
replies
16k
views
11 follow
Is there a tool that sorts gtf files?
RNA-Seq genome
updated 23 months ago by 73k • written 5.2 years ago by ▴ 640
0
votes
0
replies
968
views
Comment: C: Handling Microarray datasets from different experiments for DEG analysis
3.3 years ago by JJ ▴ 640
1
vote
1
reply
968
views
Answer: C: Handling Microarray datasets from different experiments for DEG analysis
3.3 years ago by JJ ▴ 640
0
votes
0
replies
732
views
Comment: C: Estimation of RNA-seq protocol from bam files
3.3 years ago by JJ ▴ 640
0
votes
0
replies
732
views
Comment: C: Estimation of RNA-seq protocol from bam files
3.3 years ago by JJ ▴ 640
3
votes
5
replies
732
views
Estimation of RNA-seq protocol from bam files
RNA-Seq
updated 3.4 years ago by ▴ 140 • written 3.4 years ago by ▴ 640
3
votes
1
reply
897
views
RNAseq recommendations / terms read pairs vs. reads for paired end experiments
RNA-Seq
updated 3.5 years ago by ★ 1.2k • written 3.5 years ago by ▴ 640
0
votes
0
replies
1.1k
views
Answer: A: Do all samples in SRA have a corresponding sample in BioSample?
3.6 years ago by JJ ▴ 640
0
votes
0
replies
1.5k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
3.6 years ago by JJ ▴ 640
0
votes
0
replies
1.5k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
3.6 years ago by JJ ▴ 640
4
votes
6
replies
1.5k
views
Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
RNA-seq
updated 3.6 years ago by ▴ 570 • written 3.6 years ago by ▴ 640
0
votes
0
replies
1.5k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
3.6 years ago by JJ ▴ 640
0
votes
1
reply
3.0k
views
Comment: C: TCGA CNV data - immensely different results depending on data source
3.8 years ago by JJ ▴ 640
2
votes
5
replies
3.0k
views
TCGA CNV data - immensely different results depending on data source
genome CNV TCGA
3.8 years ago by JJ ▴ 640
6
votes
15
replies
6.0k
views
Compute Phylogenetic Trees Using Snps Data (VCF files)
SNP
updated 4.1 years ago by ▴ 50 • written 5.0 years ago by ▴ 640
0
votes
0
replies
1.1k
views
Comment: C: Pathway analysis with co-variates for RNA-seq data
4.3 years ago by JJ ▴ 640
0
votes
1
reply
1.1k
views
Comment: C: Pathway analysis with co-variates for RNA-seq data
4.3 years ago by JJ ▴ 640
5
votes
4
replies
1.1k
views
Pathway analysis with co-variates for RNA-seq data
RNA-Seq
updated 4.3 years ago by 85k • written 4.3 years ago by ▴ 640
0
votes
0
replies
647
views
Help with Designing an Approach for Biomarker Signature Generation
RNA-Seq gene
4.3 years ago by JJ ▴ 640
0
votes
0
replies
2.9k
views
Comment: C: SRA and the relationship between biosamples, experiments and runs
4.3 years ago by JJ ▴ 640
0
votes
1
reply
2.9k
views
Comment: C: SRA and the relationship between biosamples, experiments and runs
4.3 years ago by JJ ▴ 640
3
votes
4
replies
2.9k
views
SRA and the relationship between biosamples, experiments and runs
sequencing
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 640
0
votes
2
replies
18k
views
Comment: C: Calculation of VAF (variant allele frequency)
4.3 years ago by JJ ▴ 640
12
votes
4
replies
18k
views
Calculation of VAF (variant allele frequency)
sequencing
updated 6 months ago by ▴ 30 • written 4.4 years ago by ▴ 640
0
votes
0
replies
1.8k
views
Comment: C: Error using Tabix
4.4 years ago by JJ ▴ 640
0
votes
0
replies
3.1k
views
Comment: C: VCF file (annotated with snpeff) to MAF
4.4 years ago by JJ ▴ 640
0
votes
0
replies
859
views
Comment: C: Genome and transcriptome analyses in yeast
4.6 years ago by JJ ▴ 640
0
votes
2
replies
859
views
Genome and transcriptome analyses in yeast
SNP rna-seq sequencing
4.6 years ago by JJ ▴ 640
0
votes
1
reply
6.0k
views
Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
4.6 years ago by JJ ▴ 640
1
vote
0
replies
800
views
Is there a tool that can identify longer insertions using genome resequencing data?
genome alignment
4.6 years ago by JJ ▴ 640
4
votes
2
replies
1.1k
views
Best state-of-the-art tool for ab initio-based gene prediction / annotation of genome assemblies
Assembly
4.7 years ago by JJ ▴ 640
0
votes
0
replies
2.2k
views
Comment: C: How many Mio reads are recommended for RNA-sequencing experiments in yeast?
4.7 years ago by JJ ▴ 640
1
vote
2
replies
2.2k
views
How many Mio reads are recommended for RNA-sequencing experiments in yeast?
RNA-Seq
updated 4.7 years ago by ★ 2.5k • written 4.7 years ago by ▴ 640
0
votes
1
reply
1.8k
views
How can I perform DE analysis for GRO-seq data between conditions?
GRO-seq RNA-Seq
updated 4.8 years ago by ★ 14k • written 4.8 years ago by ▴ 640
0
votes
0
replies
1.6k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
4.8 years ago by JJ ▴ 640
0
votes
1
reply
1.6k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
4.8 years ago by JJ ▴ 640
0
votes
1
reply
1.6k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
4.8 years ago by JJ ▴ 640
9
votes
7
replies
1.6k
views
How to evaluate a biomarker signature in an independent dataset
RNA-Seq
4.8 years ago by JJ ▴ 640
0
votes
0
replies
1.5k
views
Comment: C: Tools for Biomarker Signature Generation
4.8 years ago by JJ ▴ 640
0
votes
1
reply
1.5k
views
Comment: C: Tools for Biomarker Signature Generation
4.8 years ago by JJ ▴ 640
0
votes
1
reply
6.8k
views
Comment: C: Resources for gene signature creation
4.8 years ago by JJ ▴ 640
0
votes
1
reply
6.8k
views
Comment: C: Resources for gene signature creation
4.8 years ago by JJ ▴ 640
2
votes
4
replies
1.5k
views
Tools for Biomarker Signature Generation
RNA-Seq
4.8 years ago by JJ ▴ 640
0
votes
1
reply
6.8k
views
Comment: C: Resources for gene signature creation
4.8 years ago by JJ ▴ 640
0
votes
0
replies
2.9k
views
Answer: A: GRCh38 Annotation for non coding RNA (e.g. miRNA)
4.9 years ago by JJ ▴ 640
164 results • Page 1 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6