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40
votes
23
replies
29k
views
12 follow
Is there a tool that sorts gtf files?
RNA-Seq genome
updated 2.1 years ago by ▴ 150 • written 7.6 years ago by ▴ 760
19
votes
10
replies
16k
views
7 follow
Automatic Outlier Detection for RNA-seq data
RNA-Seq outlier rrcov
updated 4.1 years ago by ▴ 130 • written 8.0 years ago by ▴ 760
1
vote
0
replies
9.9k
views
Comment: C: Correlation heatmaps: use correlation as clustering distance or not?
4.6 years ago by JJ ▴ 760
0
votes
0
replies
4.2k
views
Comment: C: Tuning of the HISAT2 parameters --mp and --sp
4.6 years ago by JJ ▴ 760
2
votes
3
replies
4.6k
views
VCF file (annotated with snpeff) to MAF
genome sequencing
updated 5.5 years ago by ▴ 20 • written 6.8 years ago by ▴ 760
0
votes
1
reply
794
views
Extract transcripts lacking a poly(A) tail
genome
updated 5.6 years ago by 22k • written 5.6 years ago by ▴ 760
0
votes
0
replies
1.9k
views
Comment: C: Handling Microarray datasets from different experiments for DEG analysis
5.8 years ago by JJ ▴ 760
1
vote
1
reply
1.9k
views
Answer: C: Handling Microarray datasets from different experiments for DEG analysis
5.8 years ago by JJ ▴ 760
0
votes
0
replies
1.6k
views
Comment: C: Estimation of RNA-seq protocol from bam files
5.8 years ago by JJ ▴ 760
0
votes
0
replies
1.6k
views
Comment: C: Estimation of RNA-seq protocol from bam files
5.8 years ago by JJ ▴ 760
3
votes
5
replies
1.6k
views
Estimation of RNA-seq protocol from bam files
RNA-Seq
updated 5.8 years ago by ▴ 150 • written 5.8 years ago by ▴ 760
3
votes
1
reply
1.5k
views
RNAseq recommendations / terms read pairs vs. reads for paired end experiments
RNA-Seq
updated 5.9 years ago by ★ 1.7k • written 5.9 years ago by ▴ 760
0
votes
0
replies
1.8k
views
Answer: A: Do all samples in SRA have a corresponding sample in BioSample?
6.0 years ago by JJ ▴ 760
0
votes
0
replies
3.4k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
6.0 years ago by JJ ▴ 760
0
votes
0
replies
3.4k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
6.0 years ago by JJ ▴ 760
4
votes
6
replies
3.4k
views
Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
RNA-seq
updated 6.0 years ago by ▴ 580 • written 6.0 years ago by ▴ 760
0
votes
0
replies
3.4k
views
Comment: C: Confusing RNA-seq Alignment Stats (HISAT2 & Qualimap)
6.0 years ago by JJ ▴ 760
0
votes
1
reply
5.4k
views
Comment: C: TCGA CNV data - immensely different results depending on data source
6.2 years ago by JJ ▴ 760
3
votes
5
replies
5.4k
views
TCGA CNV data - immensely different results depending on data source
genome CNV TCGA
6.2 years ago by JJ ▴ 760
6
votes
15
replies
9.1k
views
Compute Phylogenetic Trees Using Snps Data (VCF files)
SNP
updated 6.5 years ago by ▴ 60 • written 7.4 years ago by ▴ 760
0
votes
0
replies
1.9k
views
Comment: C: Pathway analysis with co-variates for RNA-seq data
6.7 years ago by JJ ▴ 760
0
votes
1
reply
1.9k
views
Comment: C: Pathway analysis with co-variates for RNA-seq data
6.7 years ago by JJ ▴ 760
5
votes
4
replies
1.9k
views
Pathway analysis with co-variates for RNA-seq data
RNA-Seq
updated 6.7 years ago by 89k • written 6.7 years ago by ▴ 760
0
votes
0
replies
900
views
Help with Designing an Approach for Biomarker Signature Generation
RNA-Seq gene
6.7 years ago by JJ ▴ 760
0
votes
0
replies
4.8k
views
Comment: C: SRA and the relationship between biosamples, experiments and runs
6.7 years ago by JJ ▴ 760
0
votes
1
reply
4.8k
views
Comment: C: SRA and the relationship between biosamples, experiments and runs
6.7 years ago by JJ ▴ 760
3
votes
4
replies
4.8k
views
SRA and the relationship between biosamples, experiments and runs
sequencing
updated 6.7 years ago by 13k • written 6.7 years ago by ▴ 760
0
votes
2
replies
27k
views
Comment: C: Calculation of VAF (variant allele frequency)
6.8 years ago by JJ ▴ 760
20
votes
4
replies
27k
views
Calculation of VAF (variant allele frequency)
sequencing
updated 2.9 years ago by ▴ 70 • written 6.8 years ago by ▴ 760
0
votes
0
replies
3.1k
views
Comment: C: Error using Tabix
6.8 years ago by JJ ▴ 760
0
votes
0
replies
4.6k
views
Comment: C: VCF file (annotated with snpeff) to MAF
6.8 years ago by JJ ▴ 760
0
votes
0
replies
1.4k
views
Comment: C: Genome and transcriptome analyses in yeast
7.0 years ago by JJ ▴ 760
0
votes
2
replies
1.4k
views
Genome and transcriptome analyses in yeast
SNP rna-seq sequencing
7.0 years ago by JJ ▴ 760
0
votes
1
reply
9.1k
views
Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
7.0 years ago by JJ ▴ 760
1
vote
0
replies
1.2k
views
Is there a tool that can identify longer insertions using genome resequencing data?
genome alignment
7.0 years ago by JJ ▴ 760
4
votes
2
replies
1.7k
views
Best state-of-the-art tool for ab initio-based gene prediction / annotation of genome assemblies
Assembly
7.1 years ago by JJ ▴ 760
0
votes
0
replies
3.4k
views
Comment: C: How many Mio reads are recommended for RNA-sequencing experiments in yeast?
7.1 years ago by JJ ▴ 760
1
vote
2
replies
3.4k
views
How many Mio reads are recommended for RNA-sequencing experiments in yeast?
RNA-Seq
updated 7.1 years ago by ★ 2.6k • written 7.1 years ago by ▴ 760
0
votes
1
reply
2.5k
views
How can I perform DE analysis for GRO-seq data between conditions?
GRO-seq RNA-Seq
updated 7.2 years ago by ★ 19k • written 7.2 years ago by ▴ 760
0
votes
0
replies
2.8k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
7.2 years ago by JJ ▴ 760
0
votes
1
reply
2.8k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
7.2 years ago by JJ ▴ 760
0
votes
1
reply
2.8k
views
Comment: C: How to evaluate a biomarker signature in an independent dataset
7.2 years ago by JJ ▴ 760
9
votes
7
replies
2.8k
views
How to evaluate a biomarker signature in an independent dataset
RNA-Seq
7.2 years ago by JJ ▴ 760
0
votes
0
replies
2.4k
views
Comment: C: Tools for Biomarker Signature Generation
7.2 years ago by JJ ▴ 760
0
votes
1
reply
2.4k
views
Comment: C: Tools for Biomarker Signature Generation
7.2 years ago by JJ ▴ 760
0
votes
1
reply
10k
views
Comment: C: Resources for gene signature creation
7.2 years ago by JJ ▴ 760
0
votes
1
reply
10k
views
Comment: C: Resources for gene signature creation
7.2 years ago by JJ ▴ 760
2
votes
4
replies
2.4k
views
Tools for Biomarker Signature Generation
RNA-Seq
7.2 years ago by JJ ▴ 760
0
votes
1
reply
10k
views
Comment: C: Resources for gene signature creation
7.2 years ago by JJ ▴ 760
0
votes
0
replies
3.9k
views
Answer: A: GRCh38 Annotation for non coding RNA (e.g. miRNA)
7.3 years ago by JJ ▴ 760
164 results • Page 1 of 4
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