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4
votes
5
replies
3.7k
views
High number of secondary alignments with HISAT2
RNA-Seq
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 680
0
votes
1
reply
21k
views
Comment: C: Is there a tool that sorts gtf files?
6.1 years ago by JJ ▴ 680
0
votes
1
reply
21k
views
Comment: C: Is there a tool that sorts gtf files?
6.1 years ago by JJ ▴ 680
1
vote
1
reply
1.0k
views
Predicted target genes - which tools are the best to use?
genome
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 680
0
votes
0
replies
1.1k
views
Comment: C: Identify lncRNAs - search for tools
6.2 years ago by JJ ▴ 680
1
vote
2
replies
1.1k
views
Identify lncRNAs - search for tools
RNA-Seq
updated 6.2 years ago by ▴ 160 • written 6.2 years ago by ▴ 680
0
votes
0
replies
12k
views
Comment: C: annotation of SV (structural variants)
6.2 years ago by JJ ▴ 680
0
votes
0
replies
6.8k
views
Comment: C: Creating Hisat2 Index
6.2 years ago by JJ ▴ 680
0
votes
1
reply
6.8k
views
Comment: C: Creating Hisat2 Index
6.2 years ago by JJ ▴ 680
0
votes
1
reply
3.7k
views
Comment: C: High number of secondary alignments with HISAT2
6.2 years ago by JJ ▴ 680
0
votes
1
reply
3.7k
views
Comment: C: High number of secondary alignments with HISAT2
6.2 years ago by JJ ▴ 680
0
votes
0
replies
4.3k
views
Answer: A: Which tool is best for Annotation of human vcf files (Snpeff or VEP or Annovar)
6.2 years ago by JJ ▴ 680
1
vote
1
reply
14k
views
Comment: C: Which strand specific option need to be used with HISAT2?
6.2 years ago by JJ ▴ 680
0
votes
1
reply
14k
views
Comment: C: Which strand specific option need to be used with HISAT2?
6.2 years ago by JJ ▴ 680
0
votes
0
replies
14k
views
Comment: C: Which strand specific option need to be used with HISAT2?
6.2 years ago by JJ ▴ 680
0
votes
1
reply
14k
views
Comment: C: Which strand specific option need to be used with HISAT2?
6.2 years ago by JJ ▴ 680
0
votes
2
replies
14k
views
Comment: C: Which strand specific option need to be used with HISAT2?
6.2 years ago by JJ ▴ 680
1
vote
0
replies
4.2k
views
Answer: A: STAR analysis and alignment
6.2 years ago by JJ ▴ 680
1
vote
1
reply
14k
views
Comment: C: Which strand specific option need to be used with HISAT2?
6.2 years ago by JJ ▴ 680
2
votes
1
reply
14k
views
Answer: A: Which strand specific option need to be used with HISAT2?
6.2 years ago by JJ ▴ 680
0
votes
0
replies
2.0k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
6.2 years ago by JJ ▴ 680
0
votes
1
reply
2.0k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
6.2 years ago by JJ ▴ 680
0
votes
0
replies
2.0k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
6.2 years ago by JJ ▴ 680
0
votes
0
replies
2.0k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
6.2 years ago by JJ ▴ 680
0
votes
1
reply
2.0k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
6.2 years ago by JJ ▴ 680
0
votes
2
replies
2.0k
views
Comment: C: Is the RNA-seq library indeed strand-specific?
6.2 years ago by JJ ▴ 680
5
votes
10
replies
2.0k
views
Is the RNA-seq library indeed strand-specific?
RNA-Seq
updated 6.2 years ago by 104k • written 6.2 years ago by ▴ 680
2
votes
1
reply
2.6k
views
Comment: C: best way to do joint genotyping
6.3 years ago by JJ ▴ 680
0
votes
0
replies
5.7k
views
Answer: A: Using gVCF mode in HaplotypeCaller ( GATK4)
6.3 years ago by JJ ▴ 680
0
votes
1
reply
1.0k
views
Answer: A: Sample data for RNA STAR
6.3 years ago by JJ ▴ 680
2
votes
1
reply
12k
views
Answer: A: annotation of SV (structural variants)
6.3 years ago by JJ ▴ 680
0
votes
1
reply
9.7k
views
Comment: C: RSeQC Output from infer_experiment.py - what does it mean?
6.3 years ago by JJ ▴ 680
0
votes
1
reply
9.7k
views
Comment: C: RSeQC Output from infer_experiment.py - what does it mean?
6.3 years ago by JJ ▴ 680
28
votes
7
replies
9.7k
views
RSeQC Output from infer_experiment.py - what does it mean?
RNA-Seq
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 680
1
vote
2
replies
3.6k
views
Tuning of the HISAT2 parameters --mp and --sp
RNA-Seq
6.3 years ago by JJ ▴ 680
1
vote
1
reply
8.4k
views
Answer: A: Too many differentially expressed genes in RNA-seq?
6.3 years ago by JJ ▴ 680
2
votes
3
replies
2.8k
views
How to access if RNA-seq data is strand-specific?
RNA-Seq
updated 6.3 years ago by 14k • written 6.3 years ago by ▴ 680
0
votes
0
replies
3.2k
views
Comment: C: How about my parallel bwa+gatk pipeline?
6.5 years ago by JJ ▴ 680
0
votes
0
replies
3.2k
views
Answer: A: How about my parallel bwa+gatk pipeline?
6.5 years ago by JJ ▴ 680
0
votes
0
replies
5.6k
views
Comment: C: Joint genotyping using GATK - how important is it?
6.5 years ago by JJ ▴ 680
0
votes
0
replies
2.4k
views
Comment: C: SNP calling using cancer cell lines
6.5 years ago by JJ ▴ 680
0
votes
1
reply
2.4k
views
Comment: C: SNP calling using cancer cell lines
6.5 years ago by JJ ▴ 680
4
votes
5
replies
2.4k
views
SNP calling using cancer cell lines
SNP GATK
updated 6.5 years ago by 26k • written 6.5 years ago by ▴ 680
0
votes
0
replies
2.4k
views
Comment: C: SNP calling using cancer cell lines
6.5 years ago by JJ ▴ 680
0
votes
0
replies
8.0k
views
Comment: C: Clustering data - data transformation (log2) highly improves clustering but why?
6.5 years ago by JJ ▴ 680
0
votes
1
reply
8.0k
views
Comment: C: Clustering data - data transformation (log2) highly improves clustering but why?
6.5 years ago by JJ ▴ 680
2
votes
4
replies
8.0k
views
Clustering data - data transformation (log2) highly improves clustering but why?
clustering Elisa data transformation
6.5 years ago by JJ ▴ 680
0
votes
1
reply
5.6k
views
Comment: C: Joint genotyping using GATK - how important is it?
6.5 years ago by JJ ▴ 680
0
votes
0
replies
5.6k
views
Comment: C: Joint genotyping using GATK - how important is it?
6.5 years ago by JJ ▴ 680
15
votes
14
replies
5.6k
views
Joint genotyping using GATK - how important is it?
SNP sequencing
updated 6.5 years ago by 13k • written 6.5 years ago by ▴ 680
164 results • Page 3 of 4
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