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3
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1.8k
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Answer: Answer: featureCounts isn't working how I expect
updated 22 months ago by 37k • written 7.2 years ago by ★ 3.0k
3
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1
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1.6k
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Answer: C: transcripts.gtf files size vs. merged.gtf
7.3 years ago by Martombo ★ 3.0k
3
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0
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2.8k
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Answer: A: DESeq estimateSize factor, if one sample has 0
7.3 years ago by Martombo ★ 3.0k
0
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1
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4.3k
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Answer: A: GO analysis and the universe set of genes
7.3 years ago by Martombo ★ 3.0k
1
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0
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4.0k
views
Answer: A: -1 exon frame in UCSC gene table
7.3 years ago by Martombo ★ 3.0k
0
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1
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2.5k
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Answer: Answer: Best tool for Quality Assessment for Next Generation Sequencing Data?
updated 4 months ago by 37k • written 7.3 years ago by ★ 3.0k
0
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1
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10k
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Answer: Answer: correcting for a batch in DESeq2
updated 4 months ago by 37k • written 7.4 years ago by ★ 3.0k
1
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0
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3.4k
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Answer: A: Gene in ncbi
7.5 years ago by Martombo ★ 3.0k
1
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0
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3.2k
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Answer: Answer: Hi blog how to calculate differntial expression analysis if thre is no replicate
updated 21 days ago by 37k • written 7.7 years ago by ★ 3.0k
1
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1
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3.1k
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Answer: Answer: R script to extract sequences using seqinr returns Error Subscript out of bounds
updated 6 months ago by 37k • written 7.7 years ago by ★ 3.0k
3
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2
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2.4k
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Answer: Answer: replace first column based on third column in modeled PDB file
updated 12 days ago by 37k • written 7.7 years ago by ★ 3.0k
2
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1
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2.4k
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Answer: C: How to view and analyze BAM files from SOLiD Bioscope alignment
7.8 years ago by Martombo ★ 3.0k
2
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1
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3.4k
views
Answer: Answer: Deseq2 error using HTSeq input for 10 samples with 3 replicates each
updated 7 months ago by 37k • written 7.8 years ago by ★ 3.0k
2
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1
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2.5k
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Answer: A: Why is the quality of contigs better with a merged file than separated files? Us
7.8 years ago by Martombo ★ 3.0k
7
votes
1
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6.7k
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Answer: Answer: What is the normalization w.r.t to gene expression counts or values?
updated 7 months ago by 37k • written 7.8 years ago by ★ 3.0k
5
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1
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3.6k
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Answer: Answer: Tophat --max-multihits option
updated 7 months ago by 37k • written 7.8 years ago by ★ 3.0k
1
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0
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1.5k
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Answer: Answer: minor introns database
updated 9 months ago by 37k • written 8.0 years ago by ★ 3.0k
0
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1
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2.2k
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Answer: Answer: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
updated 9 months ago by 37k • written 8.0 years ago by ★ 3.0k
3
votes
0
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5.1k
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Answer: A: Why Is Tophat Reporting Secondary Alignments Even When The Option To Do So Is Tu
8.0 years ago by Martombo ★ 3.0k
0
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1
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2.3k
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Answer: A: Cutoff of reads in htseq
8.1 years ago by Martombo ★ 3.0k
2
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1
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2.0k
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Answer: Answer: ERROR RNA SEQ QC analysis step
8.2 years ago by Martombo ★ 3.0k
3
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0
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5.3k
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Answer: Answer: Comparative boxplots with R
updated 14 months ago by 37k • written 8.2 years ago by ★ 3.0k
1
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2
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4.1k
views
Answer: Answer: Pipeline to get htseq read counts, ignoring alternative splicing
updated 12 months ago by 37k • written 8.3 years ago by ★ 3.0k
1
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0
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3.5k
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Answer: Answer: Where can I find mirna primary transcripts and their genomic coordinates?
updated 12 months ago by 37k • written 8.3 years ago by ★ 3.0k
0
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0
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2.5k
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Answer: Answer: Need a pseudocode for image-analysis
updated 12 months ago by 37k • written 8.3 years ago by ★ 3.0k
2
votes
0
replies
3.7k
views
Answer: Answer: Pirnas Sequence Files In Fasta Format For Rat And Mapping Small Rna Seq Reads
updated 13 months ago by 37k • written 8.4 years ago by ★ 3.0k
3
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1
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4.2k
views
Answer: Answer: How can I change the color and font size for just one node in cytoscape3 ?
updated 13 months ago by 37k • written 8.4 years ago by ★ 3.0k
2
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3
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1.2k
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Answer: C: How to use R to achieve u test
8.5 years ago by Martombo ★ 3.0k
0
votes
1
reply
4.1k
views
Answer: Answer: Microarray meta analysis with SOFT datasets
updated 14 months ago by 37k • written 8.5 years ago by ★ 3.0k
1
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0
replies
2.4k
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Answer: Answer: Purifying selection M7 and M8 models
updated 15 months ago by 37k • written 8.6 years ago by ★ 3.0k
4
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3
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4.6k
views
Answer: A: DESeq differential expression
8.6 years ago by Martombo ★ 3.0k
0
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1
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6.8k
views
Answer: Answer: Have anybody converted exome bam files to .tdf files for visualization in IGV?
updated 15 months ago by 37k • written 8.6 years ago by ★ 3.0k
1
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1
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4.1k
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Answer: A: Optimized parameters for trimming single-end reads using Trimmomatic
8.6 years ago by Martombo ★ 3.0k
2
votes
1
reply
5.4k
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Answer: A: finding differentially expressed genes in three arm treatment RNA seq data
8.7 years ago by Martombo ★ 3.0k
0
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1
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2.7k
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Answer: C: How To Check That Tophat Works Well
8.8 years ago by Martombo ★ 3.0k
2
votes
1
reply
2.6k
views
Answer: Answer: Venn Diagram From Cap3 Output
updated 9 months ago by 37k • written 8.8 years ago by ★ 3.0k
5
votes
0
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4.8k
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Answer: A: Cufflinks -G And -G Difference?
8.9 years ago by Martombo ★ 3.0k
0
votes
0
replies
3.3k
views
Answer: A: Mirdeep2 Quantifier Module Output Files
8.9 years ago by Martombo ★ 3.0k
12
votes
2
replies
26k
views
Answer: A: Sjdboverhang Option In Star
8.9 years ago by Martombo ★ 3.0k
1
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1
reply
3.1k
views
Answer: A: Finding Mirna Binding Site In Transcriptome Of An Organisim
8.9 years ago by Martombo ★ 3.0k
0
votes
0
replies
2.8k
views
Answer: A: Linking Transcription Factors To Gene Promoters
9.0 years ago by Martombo ★ 3.0k
4
votes
2
replies
3.6k
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Answer: A: Summarizing Mirna-Seq Data Based On Ucsc Hg19 Alignment Results
9.0 years ago by Martombo ★ 3.0k
2
votes
0
replies
3.9k
views
Answer: A: Plot Table With All Replicates In Cuffdiff Output With Cummerbund
9.1 years ago by Martombo ★ 3.0k
2
votes
1
reply
7.8k
views
Answer: A: Mirdeep2 Quantifier Module Output
9.1 years ago by Martombo ★ 3.0k
2
votes
0
replies
3.6k
views
Answer: A: Mirtron Predicted Targets In Humans
9.5 years ago by Martombo ★ 3.0k
2
votes
0
replies
2.2k
views
Answer: A: Comparing Single Amino Acid Use
10.0 years ago by Martombo ★ 3.0k
2
votes
2
replies
12k
views
Answer: A: Getting Gene Names From Genbank Ids
updated 10.9 years ago by 49k • written 10.9 years ago by ★ 3.0k
6
votes
0
replies
5.8k
views
Answer: A: Help For Paml About The Positive Selection
11.0 years ago by Martombo ★ 3.0k
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