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2
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1
reply
948
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Ancestral sequence reconstruction at each node of a gene tree
tree reconstruction ancestral gene
updated 2.7 years ago by ▴ 880 • written 2.7 years ago by ▴ 220
1
vote
1
reply
1.5k
views
Comment: Comment: Split multiple annotations from SnpEff
3.0 years ago by biomonte ▴ 220
6
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3
replies
1.5k
views
Split multiple annotations from SnpEff
SnpEff AWK Bash VCF Annotation
updated 3.0 years ago by 6.2k • written 3.0 years ago by ▴ 220
1
vote
0
replies
1.3k
views
Comment: Comment: Evolutionary dynamics with OMAmer HOGs (orthoXML file?)
3.7 years ago by biomonte ▴ 220
1
vote
2
replies
1.3k
views
Evolutionary dynamics with OMAmer HOGs (orthoXML file?)
orthologs OMAmer HOGs oma pyHAM
3.7 years ago by biomonte ▴ 220
0
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0
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6.0k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
4.3 years ago by biomonte ▴ 220
9
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11
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6.0k
views
BED file: Find intervals that overlap a certain percentage and keep the longest one
Bed bedtools bash bedops
4.3 years ago by biomonte ▴ 220
0
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0
replies
6.0k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
4.4 years ago by biomonte ▴ 220
0
votes
1
reply
6.0k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
4.4 years ago by biomonte ▴ 220
1
vote
1
reply
6.0k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
4.4 years ago by biomonte ▴ 220
1
vote
1
reply
6.0k
views
Comment: Comment: BED file: Find intervals that overlap a certain percentage and keep the longest
4.4 years ago by biomonte ▴ 220
0
votes
0
replies
56k
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Comment: Comment: How To Split A Multiple Fasta
4.5 years ago by biomonte ▴ 220
1
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0
replies
2.8k
views
Answer: Answer: genBlastA output file .gblast error
4.5 years ago by biomonte ▴ 220
0
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0
replies
2.8k
views
Comment: Comment: s. start and s.end in tabular BLAST output are the wrong way around?
4.5 years ago by biomonte ▴ 220
0
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1
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4.0k
views
Comment: C: How to identify single-copy genes across multiple complete genomes?
7.4 years ago by biomonte ▴ 220
4
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4
replies
4.0k
views
How to identify single-copy genes across multiple complete genomes?
target capture hybpiper spades single-copy genes
7.4 years ago by biomonte ▴ 220
0
votes
2
replies
2.1k
views
Script error when extracting sequences of a list of orthologous groups
bash orthomcl software error blast
updated 7.5 years ago by • 0 • written 8.5 years ago by ▴ 220
1
vote
1
reply
2.4k
views
Paralog detection after target capture - HybPiper
HybPiper target capture paralogy SPAdes Exonerate
7.5 years ago by biomonte ▴ 220
1
vote
0
replies
3.5k
views
Answer: A: Should replicate analyses of ADMIXTURE all have the same cross-validation values
8.3 years ago by biomonte ▴ 220
4
votes
6
replies
5.1k
views
Is TransDecoder predicting the "true" set of protein-coding regions?
RNA-Seq TransDecoder ORF
updated 8.3 years ago by 20 • written 8.5 years ago by ▴ 220
2
votes
1
reply
3.1k
views
Converting a big SNP genotype table to plink (.ped) file for ADMIXTURE
plink SNP PED format admixture perl
updated 8.3 years ago by 8.9k • written 8.3 years ago by ▴ 220
1
vote
0
replies
4.1k
views
Comment: C: Problems creating a blast database
8.4 years ago by biomonte ▴ 220
1
vote
2
replies
5.4k
views
Answer: A: Trinotate error DBD::SQLite::db do failed: no such table:
8.4 years ago by biomonte ▴ 220
2
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1
reply
4.1k
views
Answer: A: Problems creating a blast database
8.4 years ago by biomonte ▴ 220
0
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0
replies
6.3k
views
Comment: C: pathway mapping using KEGG
8.5 years ago by biomonte ▴ 220
1
vote
1
reply
6.3k
views
Comment: C: pathway mapping using KEGG
8.5 years ago by biomonte ▴ 220
0
votes
1
reply
17k
views
Comment: C: How to extract the longest orf?
8.5 years ago by biomonte ▴ 220
0
votes
1
reply
5.1k
views
Comment: C: Is TransDecoder predicting the "true" set of protein-coding regions?
8.5 years ago by biomonte ▴ 220
0
votes
1
reply
5.1k
views
Comment: C: Is TransDecoder predicting the "true" set of protein-coding regions?
8.5 years ago by biomonte ▴ 220
0
votes
1
reply
6.3k
views
Comment: C: pathway mapping using KEGG
8.5 years ago by biomonte ▴ 220
5
votes
1
reply
9.2k
views
Answer: A: Prepare gene families for CAFE
8.5 years ago by biomonte ▴ 220
0
votes
0
replies
2.1k
views
Answer: A: Script error when extracting sequences of a list of orthologous groups
8.5 years ago by biomonte ▴ 220
0
votes
0
replies
8.9k
views
Comment: Comment: orthomcl error: The total number of locks exceeds the lock table size at orthomc
updated 3.1 years ago by 45k • written 8.5 years ago by ▴ 220
0
votes
0
replies
7.8k
views
Answer: A: How to know the name of the pathways using KO numbers?
8.6 years ago by biomonte ▴ 220
0
votes
2
replies
6.3k
views
Answer: Answer: pathway mapping using KEGG
updated 3.0 years ago by 45k • written 8.6 years ago by ▴ 220
3
votes
1
reply
2.6k
views
How to correctly format WEGO's input with Perl
RNA-Seq perl wego gene ontology trinotate
9.0 years ago by biomonte ▴ 220
0
votes
1
reply
22k
views
Comment: A: Easy way to run easily orthoMCL (Copy & paste)
9.1 years ago by biomonte ▴ 220
0
votes
2
replies
22k
views
Comment: C: Easy way to run easily orthoMCL (Copy & paste)
9.1 years ago by biomonte ▴ 220
0
votes
0
replies
15k
views
Comment: C: A:orthomcl with local mysql server on linux server, complete install
9.1 years ago by biomonte ▴ 220
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