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2.3k
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Answer: Answer: Functional enrichment analysis of bacteria
21 months ago by Guangchuang Yu ★ 2.6k
0
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0
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3.0k
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Comment: Comment: clusterProfiler::enrichGO() is getting very slow
21 months ago by Guangchuang Yu ★ 2.6k
1
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1
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3.7k
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Answer: Answer: relevel the clusterProfiler object
21 months ago by Guangchuang Yu ★ 2.6k
0
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0
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4.3k
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Answer: Answer: How to get KEGG pathway names in KEGG enrichment analysis using clusterprofiler
21 months ago by Guangchuang Yu ★ 2.6k
0
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0
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6.4k
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Comment: Comment: gseGO: no term enriched under specific pvalueCutoff
21 months ago by Guangchuang Yu ★ 2.6k
0
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0
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3.5k
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Answer: Answer: clusterProfiler and enrichplot: visualising groupGO results with individual gene
21 months ago by Guangchuang Yu ★ 2.6k
1
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1
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8.3k
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Answer: Answer: What's the difference between enrichKEGG and gseKEGG
21 months ago by Guangchuang Yu ★ 2.6k
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0
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1.2k
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Comment: Comment: clusterProfiler cnetplot error
21 months ago by Guangchuang Yu ★ 2.6k
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0
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1.1k
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Answer: Answer: GO enrichment analysis in R on Solanum lycopersicum proteomics dataset
21 months ago by Guangchuang Yu ★ 2.6k
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0
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1.3k
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Answer: Answer: GO and KEGG pathway analysis of lncRNA genes
21 months ago by Guangchuang Yu ★ 2.6k
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1
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1.1k
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Comment: Comment: clusterProfiler won't read gene list
21 months ago by Guangchuang Yu ★ 2.6k
1
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0
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937
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Answer: Answer: clusterProfiler gene list retrieval
21 months ago by Guangchuang Yu ★ 2.6k
2
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0
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1.8k
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Answer: Answer: Issues with enricher() function from clusterProfiler
22 months ago by Guangchuang Yu ★ 2.6k
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0
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7.2k
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Comment: Comment: ClusterProfiler A software for functional enrichment of differentially expressed
22 months ago by Guangchuang Yu ★ 2.6k
1
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4.2k
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Answer: Answer: clusterprofiler: How to extract genes of a specific GO-term/pathway
22 months ago by Guangchuang Yu ★ 2.6k
2
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0
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9.2k
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Answer: A: How do I add circles to the tips of a phylogenetic tree that have white fill and
2.5 years ago by Guangchuang Yu ★ 2.6k
0
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1
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2.6k
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Answer: A: plotting trees in R: node labels from nexus tree files
2.5 years ago by Guangchuang Yu ★ 2.6k
2
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1
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15k
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Answer: A: showing specific GO pathways in the dotplot or cnetplot
2.6 years ago by Guangchuang Yu ★ 2.6k
1
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0
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6.4k
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Answer: A: How to use WEGO (Web Gene Ontology Annotation Plot)
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 2.6k
2
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3
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5.3k
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Answer: A: GeneBank accession 2 Entrez gene id
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 2.6k
0
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0
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3.5k
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Answer: A: ChIPseeker Error: Attempting to annotatePeaks
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 2.6k
0
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0
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9.5k
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Answer: A: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 2.6k
4
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0
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3.8k
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Answer: A: R ggtree adding metadata based on tree structure
3.6 years ago by Guangchuang Yu ★ 2.6k
2
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1
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4.7k
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Answer: A: clusterProfiler enrichGO gene size filter with minGSSize doesn't seem to work
3.6 years ago by Guangchuang Yu ★ 2.6k
1
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0
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3.9k
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Answer: A: How do I annotate a tree with boostrap scores and color code clades in ggtree?
3.8 years ago by Guangchuang Yu ★ 2.6k
0
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0
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2.5k
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Comment: C: R color tree ggtree
4.1 years ago by Guangchuang Yu ★ 2.6k
2
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1
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5.3k
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Answer: A: clusterProfiler: cnetplot with interactive output
4.1 years ago by Guangchuang Yu ★ 2.6k
2
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2
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3.3k
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Answer: A: ClusterProfiler fails to find GO terms
4.2 years ago by Guangchuang Yu ★ 2.6k
1
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0
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3.0k
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Answer: A: R tidytree ggtree error
4.4 years ago by Guangchuang Yu ★ 2.6k
1
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1
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17k
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Comment: C: Dotplot for filtered pathways result
4.4 years ago by Guangchuang Yu ★ 2.6k
1
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2
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3.1k
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Answer: A: Plot lines color change in plotAvgProf2 [ChIPseeker]
4.5 years ago by Guangchuang Yu ★ 2.6k
1
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1
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1.4k
views
Answer: C: Showing more terms in the result of GESA by ClusterProfiler
updated 4.6 years ago by 11k • written 4.7 years ago by ★ 2.6k
1
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0
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2.9k
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Answer: A: extract gseaResult in clusterprofiler
4.7 years ago by Guangchuang Yu ★ 2.6k
0
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0
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5.8k
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Comment: C: ClusterProfiler cannot map any gene
4.7 years ago by Guangchuang Yu ★ 2.6k
2
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1
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5.8k
views
Comment: C: ClusterProfiler cannot map any gene
4.7 years ago by Guangchuang Yu ★ 2.6k
2
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0
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17k
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Answer: A: How to convert fasta file format to phylip file format
4.7 years ago by Guangchuang Yu ★ 2.6k
0
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2
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3.9k
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Answer: A: GSEA results change in clusterProfiler
4.7 years ago by Guangchuang Yu ★ 2.6k
3
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1
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27k
views
Answer: A: Get All The Genes In A Pathway (E.G. Kegg)
updated 4.7 years ago by 39k • written 11.6 years ago by ★ 2.6k
23
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10
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11k
views
Tool: ggtree: phylogenetic tree visualization and annotation
ggtree visualization phylogeny Tool
updated 4.8 years ago by • 0 • written 6.9 years ago by ★ 2.6k
0
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2
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10k
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Comment: C: Difference between ape::root, ggtree::reroot and phytools::reroot in R
4.8 years ago by Guangchuang Yu ★ 2.6k
0
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1
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2.9k
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Comment: C: mgeneSim function in GOSemSim package: error: r in go_matrix[gos[[i]], gos[[j]]]
4.8 years ago by Guangchuang Yu ★ 2.6k
0
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1
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2.9k
views
Comment: C: mgeneSim function in GOSemSim package: error: r in go_matrix[gos[[i]], gos[[j]]]
4.8 years ago by Guangchuang Yu ★ 2.6k
13
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1
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6.1k
views
Tool: clusterProfiler: an R package for comparing biological themes among gene clusters
R clusterProfiler GO KEGG GSEA Tool
4.8 years ago by Guangchuang Yu ★ 2.6k
0
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1
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2.9k
views
Answer: A: mgeneSim function in GOSemSim package: error: r in go_matrix[gos[[i]], gos[[j]]]
4.8 years ago by Guangchuang Yu ★ 2.6k
0
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0
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2.3k
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Answer: A: Downstream proportions are not identical in vennpie and upsetplot results
4.9 years ago by Guangchuang Yu ★ 2.6k
0
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1
reply
4.2k
views
Answer: A: upsetplot in clusterprofiler
4.9 years ago by Guangchuang Yu ★ 2.6k
0
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1
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2.3k
views
Comment: A: Downstream proportions are not identical in vennpie and upsetplot results
4.9 years ago by Guangchuang Yu ★ 2.6k
1
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1
reply
2.3k
views
Answer: A: How to get the all the overlap information of a peak in ChIPseeker
4.9 years ago by Guangchuang Yu ★ 2.6k
2
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1
reply
5.2k
views
Answer: A: how does ggtree interprets branch support value (e.g bootstrap value) given as n
updated 4.9 years ago by 11k • written 4.9 years ago by ★ 2.6k
1
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1
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3.2k
views
Comment: C: Pathways Enrichment Analysis.
5.1 years ago by Guangchuang Yu ★ 2.6k
204 results • Page 1 of 5
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