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8
votes
10
replies
2.3k
views
picard sortsam error
alignment Assembly next-gen software error
updated 4.2 years ago by 165k • written 4.2 years ago by 3.2k
1
vote
1
reply
1.3k
views
Understand GTF produced by StringTie
RNA-Seq Assembly
updated 21 months ago by ▴ 10 • written 4.4 years ago by 3.2k
3
votes
2
replies
1.4k
views
Is it possible to obtain gene description (from gene ids) for D. melanogaster with the biomaRt R package?
R gene
updated 4.6 years ago by 150k • written 4.6 years ago by 3.2k
5
votes
3
replies
3.5k
views
Which is the proper RNA-seq count table transformation to perform hierarchial clustering analysis?
RNA-Seq stats clustering
updated 4.6 years ago by 4.1k • written 4.6 years ago by 3.2k
7
votes
2
replies
1.6k
views
Which is the best approach to get DEG across one condition, in a three-factor design experiment?
RNA-Seq edgeR
updated 4.6 years ago by 105k • written 4.6 years ago by 3.2k
3
votes
2
replies
1.6k
views
How do I get the unique SNPs for each strain?
snp
updated 5.4 years ago by 165k • written 5.4 years ago by 3.2k
6
votes
3
replies
4.1k
views
How to perform local realignment around indels without a known vcf file of indels with GATK?
SNP next-gen
updated 5.4 years ago by ★ 1.6k • written 5.4 years ago by 3.2k
6
votes
2
replies
2.1k
views
Which non-parametric statistical test should I use for pairwise comparisons: Mann-Whitney U or paired Wilcoxon signed-rank?
next-gen stats
5.7 years ago by antonioggsousa 3.2k
0
votes
0
replies
1.4k
views
Which software can I use to produce an IPR table from shotgun metagenomics data?
next-gen sequencing gene
8.1 years ago by antonioggsousa 3.2k
1
vote
2
replies
5.7k
views
Validate QIIME pipeline using 16S rDNA amplicon data (Illumina MiSeq) already demultiplexed
next-gen QIIME 16SrRNA Illumina MiSeq
updated 8.3 years ago by 150k • written 8.3 years ago by 3.2k
0
votes
2
replies
2.0k
views
Alternatives to my own server to run 16S rDNA amplicon sequencing data using MOTHUR pipeline
next-gen
8.4 years ago by antonioggsousa 3.2k
2
votes
2
replies
2.9k
views
How can i custom the reference database that i want to use in QIIME?
next-gen
updated 8.4 years ago by ▴ 660 • written 8.4 years ago by 3.2k
7
votes
5
replies
5.4k
views
How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiSeq using QIIME pipeline?
next-gen
8.4 years ago by antonioggsousa 3.2k
0
votes
0
replies
2.3k
views
Which is the difference between a rarefaction curve with OTUs and Paths in the y-axis?
next-gen
8.4 years ago by antonioggsousa 3.2k
0
votes
0
replies
1.9k
views
Can I convert a excel file from the automated pipeline SILVAngs to biom format?
next-gen
8.5 years ago by antonioggsousa 3.2k
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