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Comment: C: How to merge vcf files (output of VarScan2 somatic)?
5.4 years ago by Raheleh ▴ 260
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0
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7.9k
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Comment: C: Problem in using picard.jar
5.4 years ago by Raheleh ▴ 260
0
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3.2k
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Comment: C: How to merge vcf files (output of VarScan2 somatic)?
5.4 years ago by Raheleh ▴ 260
7
votes
7
replies
3.2k
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How to merge vcf files (output of VarScan2 somatic)?
varscan2 merge vcf SNP indel
5.4 years ago by Raheleh ▴ 260
0
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0
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3.0k
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Comment: C: Is it necessary to mark the duplicates, realign the data and recalibrate base qu
5.4 years ago by Raheleh ▴ 260
7
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7
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3.0k
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Is it necessary to mark the duplicates, realign the data and recalibrate base quality score (VarScan2)?
VarScan2 WES data duplicate realignment
updated 5.4 years ago by 82k • written 5.4 years ago by ▴ 260
0
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0
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3.0k
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Comment: C: Is it necessary to mark the duplicates, realign the data and recalibrate base qu
5.4 years ago by Raheleh ▴ 260
0
votes
1
reply
3.0k
views
Comment: C: Is it necessary to mark the duplicates, realign the data and recalibrate base qu
5.4 years ago by Raheleh ▴ 260
0
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0
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4.1k
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Comment: C: Downstream analysis of VCF files obtained from VarScan2
5.4 years ago by Raheleh ▴ 260
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0
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2.0k
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Comment: C: Problem in using VarScan fpfilter
5.5 years ago by Raheleh ▴ 260
0
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1
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1.3k
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Comment: C: Problem in generating hc.readcount files using bam-readcount
5.5 years ago by Raheleh ▴ 260
0
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3
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1.3k
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Problem in generating hc.readcount files using bam-readcount
bam-readcount hc.readcount file BAM index
updated 5.5 years ago by 82k • written 5.5 years ago by ▴ 260
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0
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1.5k
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Comment: C: Finding somatic and germline variations in tumor samples with matched ones (pair
5.5 years ago by Raheleh ▴ 260
0
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0
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1.3k
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Error in normalizing lines of sequence in a fasta file using NormalizeFasta (Picard)
picard NormalizeFasta varscan bam-readcount
5.5 years ago by Raheleh ▴ 260
0
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2
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1.1k
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linux command line for analyzing WES data
WES data linux command line
5.5 years ago by Raheleh ▴ 260
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0
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1.5k
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Comment: C: Finding somatic and germline variations in tumor samples with matched ones (pair
5.5 years ago by Raheleh ▴ 260
1
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3
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1.5k
views
Finding somatic and germline variations in tumor samples with matched ones (paired-end, illumina)
WES data mpileup file varscan
updated 5.5 years ago by 82k • written 5.5 years ago by ▴ 260
4
votes
3
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2.2k
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The result of differential gene expression analysis should be extracted based on adj.p.value ?
limma microarray bioconductor R
updated 19 days ago by 43k • written 6.3 years ago by ▴ 260
13
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7
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6.6k
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Why some probes have "NA" for gene symbol and Entrez ID?
affymetrix microarray NA genesymbol
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 260
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1
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6.6k
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Comment: C: Why some probes have "NA" for gene symbol and Entrez ID?
7.5 years ago by Raheleh ▴ 260
1
vote
1
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6.6k
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Comment: C: Why some probes have "NA" for gene symbol and Entrez ID?
7.5 years ago by Raheleh ▴ 260
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