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Showing :
questions
4
votes
7
replies
1.1k
views
From TPM to raw counts
tpm
Deconvolution
rnaseq
3 months ago by
Gama313
▴ 120
0
votes
5
replies
955
views
RNASeq differential expression masked by pathways disregulation
normalization
Rnaseq
batch
15 months ago by
Gama313
▴ 120
17
votes
2
replies
2.1k
views
Hugely different results between edgeR and DESeq2
edgeR
RNASeq
Expression
Differential
DESeq2
updated 15 months ago by
Gordon Smyth
★ 7.1k • written 15 months ago by
Gama313
▴ 120
3
votes
6
replies
846
views
Evaluating RNASeq counts distribution
negative
differential
RNASeq
expression
binomial
17 months ago by
Gama313
▴ 120
3
votes
9
replies
1.1k
views
Mutation filtering based on Lanes
ngs
calling
Variant
lanes
updated 18 months ago by
LChart
3.9k • written 18 months ago by
Gama313
▴ 120
3
votes
0
replies
412
views
RNASeq counts normalization for RNA degradation
gtf
TIN
RIN
integrity
RNASeq
20 months ago by
Gama313
▴ 120
0
votes
3
replies
706
views
PCR duplicates in FFPE RNASeq
PCR-duplicates
RNA-Seq
FFPE
Variant-Calling
updated 5 weeks ago by
Ram
43k • written 22 months ago by
Gama313
▴ 120
0
votes
0
replies
423
views
Coverage drops in fastq alignment against custom Immunoglobulin reference
Alignment
RNASeq
Immunoglobulin
2.7 years ago by
Gama313
▴ 120
0
votes
0
replies
649
views
Calculation of the genotype likelyhood from raw data
samtools
genotype-likelihood
bam
updated 9 months ago by
Ram
43k • written 3.6 years ago by
Gama313
▴ 120
0
votes
0
replies
608
views
Calculation of the genotype likelyhood
samtools
gatk
genotype likelihood
3.6 years ago by
Gama313
▴ 120
1
vote
2
replies
1.1k
views
pysam doesn't calculate correct nucleotide quantities from .bam file
pysam
count
python
updated 3.6 years ago by
dariober
14k • written 3.6 years ago by
Gama313
▴ 120
4
votes
9
replies
1.7k
views
Samtools mplileup detects wrong INDEL positions
samtools
mpileup
variant calling
count nuceotides
updated 4.8 years ago by
finswimmer
16k • written 4.8 years ago by
Gama313
▴ 120
0
votes
2
replies
1.7k
views
HTSeq count versus summarizeOverlaps, mismathc of exon counts
RNA-Seq
updated 7.4 years ago by
GouthamAtla
12k • written 7.4 years ago by
Gama313
▴ 120
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