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Comment: Comment: From TPM to raw counts
12 weeks ago by Gama313 ▴ 120
0
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0
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1.0k
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Comment: Comment: From TPM to raw counts
4 months ago by Gama313 ▴ 120
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1
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1.0k
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Comment: Comment: From TPM to raw counts
updated 4 months ago by 100k • written 4 months ago by ▴ 120
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0
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1.0k
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Comment: Comment: From TPM to raw counts
4 months ago by Gama313 ▴ 120
4
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7
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1.0k
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From TPM to raw counts
tpm Deconvolution rnaseq
12 weeks ago by Gama313 ▴ 120
1
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0
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1.1k
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Answer: Answer: Cibersort phenotpe file to create signature matrix
11 months ago by Gama313 ▴ 120
0
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0
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944
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Comment: Comment: RNASeq differential expression masked by pathways disregulation
14 months ago by Gama313 ▴ 120
0
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1
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944
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Comment: Comment: RNASeq differential expression masked by pathways disregulation
14 months ago by Gama313 ▴ 120
0
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5
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944
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RNASeq differential expression masked by pathways disregulation
normalization Rnaseq batch
14 months ago by Gama313 ▴ 120
17
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2
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2.1k
views
Hugely different results between edgeR and DESeq2
edgeR RNASeq Expression Differential DESeq2
updated 15 months ago by ★ 7.0k • written 15 months ago by ▴ 120
0
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0
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837
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Comment: Comment: Evaluating RNASeq counts distribution
17 months ago by Gama313 ▴ 120
0
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1
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837
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Comment: Comment: Evaluating RNASeq counts distribution
17 months ago by Gama313 ▴ 120
3
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6
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837
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Evaluating RNASeq counts distribution
negative differential RNASeq expression binomial
17 months ago by Gama313 ▴ 120
0
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0
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837
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Comment: Comment: Evaluating RNASeq counts distribution
17 months ago by Gama313 ▴ 120
0
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1
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1.1k
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Comment: Comment: Mutation filtering based on Lanes
18 months ago by Gama313 ▴ 120
0
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0
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1.1k
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Comment: Comment: Mutation filtering based on Lanes
18 months ago by Gama313 ▴ 120
0
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1
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1.1k
views
Comment: Comment: Mutation filtering based on Lanes
18 months ago by Gama313 ▴ 120
0
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0
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1.1k
views
Comment: Comment: Mutation filtering based on Lanes
18 months ago by Gama313 ▴ 120
3
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9
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1.1k
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Mutation filtering based on Lanes
ngs calling Variant lanes
updated 18 months ago by 3.9k • written 18 months ago by ▴ 120
3
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0
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409
views
RNASeq counts normalization for RNA degradation
gtf TIN RIN integrity RNASeq
20 months ago by Gama313 ▴ 120
0
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1
reply
702
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Comment: Comment: PCR duplicates in FFPE RNASeq
22 months ago by Gama313 ▴ 120
0
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3
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702
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PCR duplicates in FFPE RNASeq
PCR-duplicates RNA-Seq FFPE Variant-Calling
updated 4 weeks ago by 43k • written 22 months ago by ▴ 120
0
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0
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1.5k
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Answer: Answer: Calling variants on reads with MAPQ=0 on HaplotypeCaller or bcftools mpileup
22 months ago by Gama313 ▴ 120
0
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0
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421
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Coverage drops in fastq alignment against custom Immunoglobulin reference
Alignment RNASeq Immunoglobulin
2.6 years ago by Gama313 ▴ 120
0
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0
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643
views
Calculation of the genotype likelyhood from raw data
samtools genotype-likelihood bam
updated 9 months ago by 43k • written 3.5 years ago by ▴ 120
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0
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604
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Calculation of the genotype likelyhood
samtools gatk genotype likelihood
3.5 years ago by Gama313 ▴ 120
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0
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1.1k
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Comment: C: pysam doesn't calculate correct nucleotide quantities from .bam file
3.6 years ago by Gama313 ▴ 120
1
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2
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1.1k
views
pysam doesn't calculate correct nucleotide quantities from .bam file
pysam count python
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 120
0
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1
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1.7k
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Comment: C: Samtools mplileup detects wrong INDEL positions
4.8 years ago by Gama313 ▴ 120
0
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0
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1.7k
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Comment: C: Samtools mplileup detects wrong INDEL positions
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 120
0
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1
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1.7k
views
Comment: C: Samtools mplileup detects wrong INDEL positions
4.8 years ago by Gama313 ▴ 120
0
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1
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1.7k
views
Comment: C: Samtools mplileup detects wrong INDEL positions
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 120
4
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9
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1.7k
views
Samtools mplileup detects wrong INDEL positions
samtools mpileup variant calling count nuceotides
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 120
4
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0
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976
views
Answer: A: How separate one column in two columns?
updated 4.8 years ago by 82k • written 4.8 years ago by ▴ 120
0
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2
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1.7k
views
HTSeq count versus summarizeOverlaps, mismathc of exon counts
RNA-Seq
updated 7.4 years ago by 12k • written 7.4 years ago by ▴ 120
35 results • Page 1 of 1
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