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questions
8
votes
4
replies
6.4k
views
DESEQ2 results - write to TSV file
DESEQ2
5.9 years ago by
cpak1981
▴ 140
1
vote
1
reply
1.8k
views
drosophila reference genome - flybase >6 - explanation of files
drosophila
reference genome
6.4 years ago by
cpak1981
▴ 140
0
votes
0
replies
1.4k
views
BED columns used by MACS2
macs2
bed
6.5 years ago by
cpak1981
▴ 140
3
votes
4
replies
1.9k
views
good CIGAR value but poor MAPQ value
bwa
updated 6.6 years ago by
WouterDeCoster
47k • written 6.6 years ago by
cpak1981
▴ 140
19
votes
4
replies
13k
views
HISAT2 rna-strandness option
RNA-Seq
HISAT2
updated 6.8 years ago by
Antonio R. Franco
★ 5.1k • written 6.8 years ago by
cpak1981
▴ 140
0
votes
1
reply
3.3k
views
stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
RNA-seq
stringtie
ballgown
FPKM
6.9 years ago by
cpak1981
▴ 140
2
votes
9
replies
3.8k
views
convert2bed issue with large input file?
convert2bed
bedops
bam2bed
7.0 years ago by
cpak1981
▴ 140
6
votes
1
reply
5.0k
views
Deeptools plotHeatmap - Maintain Order of Input BED file
deeptools
plotheatmap
updated 7.1 years ago by
Devon Ryan
104k • written 7.1 years ago by
cpak1981
▴ 140
3
votes
6
replies
1.9k
views
Difference in signal-to-noise in MNase-Seq at 100 vs 200 vs 400 million reads
signal-to-noise
MNase
numbers of reads
updated 7.1 years ago by
Carlo Yague
8.7k • written 7.2 years ago by
cpak1981
▴ 140
1
vote
2
replies
3.4k
views
Distinguish BAM vs BAMPE format
BAM
BAMPE
BWA
7.1 years ago by
cpak1981
▴ 140
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