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0
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replies
1.4k
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KEGG organism ID to NCBI taxonomy ID mapping API
kegg
updated 2.1 years ago by • 0 • written 4.0 years ago by ▴ 260
1
vote
4
replies
3.6k
views
clusterProfiler::enrichGO() is getting very slow
R clusterProfiler GO
updated 2.7 years ago by ★ 2.6k • written 4.8 years ago by ▴ 260
0
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0
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888
views
Comment: C: compareProfiler - Assistance on how I can modify codes for different states
3.9 years ago by sangram_keshari ▴ 260
0
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0
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1.4k
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Answer: A: KEGG organism ID to NCBI taxonomy ID mapping API
4.0 years ago by sangram_keshari ▴ 260
0
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0
replies
955
views
Comment: C: PCA for multiple transcriptome-assemblies
4.1 years ago by sangram_keshari ▴ 260
0
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0
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713
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Comment: C: help kegg pathway
4.3 years ago by sangram_keshari ▴ 260
0
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0
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3.8k
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Comment: C: deseq2 read counts vs featurecount read counts
4.4 years ago by sangram_keshari ▴ 260
1
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2
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3.8k
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Answer: C: deseq2 read counts vs featurecount read counts
4.4 years ago by sangram_keshari ▴ 260
1
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0
replies
955
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Comment: C: PCA for multiple transcriptome-assemblies
4.6 years ago by sangram_keshari ▴ 260
1
vote
1
reply
1.5k
views
Auto find keytype from input keys (list of IDs)
R gene
4.7 years ago by sangram_keshari ▴ 260
1
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0
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12k
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Comment: C: Gene set enrichment analysis with logFC and PValue
4.7 years ago by sangram_keshari ▴ 260
0
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0
replies
2.9k
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Comment: C: Make org.db dynamic in AnnotationDbi::mapIds()
4.7 years ago by sangram_keshari ▴ 260
0
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1
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2.9k
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Comment: C: Make org.db dynamic in AnnotationDbi::mapIds()
4.7 years ago by sangram_keshari ▴ 260
0
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1
reply
2.9k
views
Comment: C: Make org.db dynamic in AnnotationDbi::mapIds()
4.7 years ago by sangram_keshari ▴ 260
3
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6
replies
2.9k
views
Make org.db dynamic in AnnotationDbi::mapIds()
R Bioconductor
updated 4.7 years ago by 3.9k • written 4.7 years ago by ▴ 260
0
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1
reply
3.6k
views
Comment: C: clusterProfiler::enrichGO() is getting very slow
4.8 years ago by sangram_keshari ▴ 260
0
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0
replies
1.8k
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Answer: A: DESeq2 Error while loading from a conda Environment
4.9 years ago by sangram_keshari ▴ 260
0
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1
reply
1.8k
views
DESeq2 Error while loading from a conda Environment
deseq2 conda
4.9 years ago by sangram_keshari ▴ 260
1
vote
1
reply
11k
views
Comment: C: What is the accurate order of preprocessing steps in DNA Microarray gene express
4.9 years ago by sangram_keshari ▴ 260
1
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0
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2.2k
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Comment: C: How to subset ExpressionSet based on vector of sample names
4.9 years ago by sangram_keshari ▴ 260
3
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0
replies
7.2k
views
Answer: A: How to work with Deepvariant
4.9 years ago by sangram_keshari ▴ 260
0
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0
replies
1.7k
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Comment: C: Compare SE and PE gene expression data.
5.2 years ago by sangram_keshari ▴ 260
3
votes
7
replies
1.7k
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Compare SE and PE gene expression data.
RNA-Seq DESeq2
updated 5.2 years ago by ▴ 120 • written 5.3 years ago by ▴ 260
0
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1
reply
1.7k
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Comment: C: Compare SE and PE gene expression data.
5.3 years ago by sangram_keshari ▴ 260
0
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0
replies
2.4k
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Comment: C: May I use numreads for doing DGE after quantifying by Salmon
5.4 years ago by sangram_keshari ▴ 260
0
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0
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2.4k
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Comment: C: May I use numreads for doing DGE after quantifying by Salmon
5.4 years ago by sangram_keshari ▴ 260
0
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0
replies
2.4k
views
Answer: A: May I use numreads for doing DGE after quantifying by Salmon
5.4 years ago by sangram_keshari ▴ 260
1
vote
1
reply
3.3k
views
Answer: A: Graphical output of Blast. What are grey and black lines?
5.4 years ago by sangram_keshari ▴ 260
0
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1
reply
1.3k
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Comment: C: General Question to shRNA-Seq analysis
5.4 years ago by sangram_keshari ▴ 260
0
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1
reply
1.6k
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Comment: C: mutual rank values for distance matrix formation for co-expression analysis
5.5 years ago by sangram_keshari ▴ 260
1
vote
0
replies
1.4k
views
Comment: C: Identifying novel isoforms from RNAseq data
5.5 years ago by sangram_keshari ▴ 260
1
vote
1
reply
1.4k
views
Answer: A: Identifying novel isoforms from RNAseq data
5.5 years ago by sangram_keshari ▴ 260
0
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0
replies
1.6k
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Comment: C: How do transcript-level gene ontology
5.5 years ago by sangram_keshari ▴ 260
0
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1
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1.6k
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Comment: C: How do transcript-level gene ontology
5.5 years ago by sangram_keshari ▴ 260
1
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1
reply
2.2k
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Comment: C: How to identify differential expressed genes if the normalization assumptions ar
5.5 years ago by sangram_keshari ▴ 260
0
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0
replies
5.7k
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Comment: C: STAR RNA-seq aligned output ReadsPerGene.out.tab
5.5 years ago by sangram_keshari ▴ 260
3
votes
0
replies
3.7k
views
Answer: A: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
5.5 years ago by sangram_keshari ▴ 260
0
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1
reply
5.7k
views
Comment: C: STAR RNA-seq aligned output ReadsPerGene.out.tab
5.5 years ago by sangram_keshari ▴ 260
0
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1
reply
1.2k
views
Comment: C: Trinity assembly resources
5.5 years ago by sangram_keshari ▴ 260
0
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0
replies
12k
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Answer: A: Gene set enrichment analysis with logFC and PValue
5.5 years ago by sangram_keshari ▴ 260
0
votes
1
reply
1.3k
views
Comment: C: conversion binary to ATGC
5.5 years ago by sangram_keshari ▴ 260
0
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2
replies
1.6k
views
Comment: C: get different heatmap from website and R
5.5 years ago by sangram_keshari ▴ 260
1
vote
0
replies
4.9k
views
Comment: C: Acceptable duplication levels in ATAC-Seq data
5.5 years ago by sangram_keshari ▴ 260
3
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1
reply
3.3k
views
Answer: C: Identifying hub nodes
5.5 years ago by sangram_keshari ▴ 260
0
votes
1
reply
1.6k
views
Comment: C: get different heatmap from website and R
5.5 years ago by sangram_keshari ▴ 260
0
votes
0
replies
1.7k
views
Comment: C: lincRNA analysis pipeline and relevant database
5.5 years ago by sangram_keshari ▴ 260
0
votes
0
replies
4.3k
views
Comment: C: Converting fasta to gtf using reference genome
5.6 years ago by sangram_keshari ▴ 260
0
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0
replies
2.2k
views
Answer: A: chromosome coordinate, rs
5.6 years ago by sangram_keshari ▴ 260
0
votes
1
reply
2.1k
views
Comment: C: gffread with wrong output
5.7 years ago by sangram_keshari ▴ 260
0
votes
1
reply
2.1k
views
Comment: C: gffread with wrong output
5.8 years ago by sangram_keshari ▴ 260
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