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2
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2
replies
5.1k
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PCA implementation in plink
Plink PCA population
updated 7.3 years ago by 11k • written 7.3 years ago by ▴ 730
0
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0
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1.2k
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Comment: C: query on a pre-process step involving GFF3
7.3 years ago by prasundutta87 ▴ 730
0
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2
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1.2k
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query on a pre-process step involving GFF3
GFF3 annotation
7.3 years ago by prasundutta87 ▴ 730
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0
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1.5k
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Comment: C: some questions on GFF3
7.3 years ago by prasundutta87 ▴ 730
1
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2
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1.5k
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some questions on GFF3
GFF GTF annotation
7.3 years ago by prasundutta87 ▴ 730
1
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2
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3.5k
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gffread query for gff to gtf conversion
GFF GTF annotation software
7.3 years ago by prasundutta87 ▴ 730
1
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0
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3.5k
views
Answer: A: gffread query for gff to gtf conversion
7.3 years ago by prasundutta87 ▴ 730
0
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0
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3.5k
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Comment: C: gffread query for gff to gtf conversion
7.3 years ago by prasundutta87 ▴ 730
11
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5
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11k
views
HISAT2 MAPQ scoring scheme
alignment
7.3 years ago by prasundutta87 ▴ 730
0
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0
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1.4k
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Comment: C: sanity check methods for checking genome assembly coordinate changes
7.3 years ago by prasundutta87 ▴ 730
0
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1
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1.4k
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Comment: C: sanity check methods for checking genome assembly coordinate changes
7.3 years ago by prasundutta87 ▴ 730
0
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4
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1.4k
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sanity check methods for checking genome assembly coordinate changes
assembly genome sequence
7.3 years ago by prasundutta87 ▴ 730
0
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0
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1.7k
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Comment: C: variant calling after reference genome is updated
7.3 years ago by prasundutta87 ▴ 730
0
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0
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1.7k
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Comment: C: variant calling after reference genome is updated
7.3 years ago by prasundutta87 ▴ 730
0
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1
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1.7k
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Comment: C: variant calling after reference genome is updated
7.3 years ago by prasundutta87 ▴ 730
3
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6
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1.7k
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variant calling after reference genome is updated
SNP variant calling WGS
7.3 years ago by prasundutta87 ▴ 730
0
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0
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6.6k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
7.5 years ago by prasundutta87 ▴ 730
0
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1
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6.6k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
7.5 years ago by prasundutta87 ▴ 730
4
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14
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6.6k
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Strategy in WGS variant calling using GATK (CombineGVCF step)
snp variant calling GATK WGS
7.5 years ago by prasundutta87 ▴ 730
0
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2
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6.6k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
7.5 years ago by prasundutta87 ▴ 730
0
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0
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6.6k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
7.5 years ago by prasundutta87 ▴ 730
0
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1
reply
6.6k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
7.5 years ago by prasundutta87 ▴ 730
1
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1
reply
6.6k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
7.5 years ago by prasundutta87 ▴ 730
0
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4
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1.5k
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addressing software versions
best practices gatk software error
7.7 years ago by prasundutta87 ▴ 730
0
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0
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1.5k
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Comment: C: addressing software versions
7.7 years ago by prasundutta87 ▴ 730
0
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0
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1.5k
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Comment: C: addressing software versions
7.7 years ago by prasundutta87 ▴ 730
1
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0
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14k
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Comment: C: fastqc adapter content
7.8 years ago by prasundutta87 ▴ 730
0
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0
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14k
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Comment: C: fastqc adapter content
7.8 years ago by prasundutta87 ▴ 730
0
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2
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14k
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Comment: C: fastqc adapter content
7.8 years ago by prasundutta87 ▴ 730
0
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2
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14k
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Comment: C: fastqc adapter content
7.8 years ago by prasundutta87 ▴ 730
8
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10
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14k
views
fastqc adapter content
sequencing fastqc quality control
updated 7.8 years ago by 154k • written 7.8 years ago by ▴ 730
0
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1
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1.9k
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Comment: C: heterozygosity during variant calling in a non-model organism such as Bubalus Bu
7.8 years ago by prasundutta87 ▴ 730
0
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3
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1.9k
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heterozygosity during variant calling in a non-model organism such as Bubalus Bubalis
next-gen sequencing DNA-seq SNP
7.8 years ago by prasundutta87 ▴ 730
0
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0
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2.9k
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Comment: C: excessive loading time for VCF files in IGV
8.0 years ago by prasundutta87 ▴ 730
0
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1
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2.9k
views
Comment: C: excessive loading time for VCF files in IGV
8.0 years ago by prasundutta87 ▴ 730
0
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1
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2.9k
views
Comment: C: excessive loading time for VCF files in IGV
8.0 years ago by prasundutta87 ▴ 730
0
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6
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2.9k
views
excessive loading time for VCF files in IGV
snp visualization IGV
8.0 years ago by prasundutta87 ▴ 730
0
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0
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1.5k
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Comment: C: some good practices doubts
8.0 years ago by prasundutta87 ▴ 730
0
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0
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8.9k
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Answer: A: How to extract reads with a known variant form a bam file
8.0 years ago by prasundutta87 ▴ 730
0
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1
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6.5k
views
Answer: A: annotating strand orientation
8.0 years ago by prasundutta87 ▴ 730
1
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0
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41k
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Answer: Answer: extract only geneID and gene symbol from GTF file
updated 2.7 years ago by 45k • written 8.0 years ago by ▴ 730
0
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0
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1.7k
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strand information issue for overlapping exons
RNA-Seq alignment exon
8.0 years ago by prasundutta87 ▴ 730
0
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0
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2.0k
views
Comment: C: Splitting reference genome for alignment
8.0 years ago by prasundutta87 ▴ 730
3
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3
replies
2.0k
views
Splitting reference genome for alignment
alignment genome gene
updated 8.0 years ago by 166k • written 8.0 years ago by ▴ 730
0
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0
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1.9k
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Comment: C: variant calling by GATK question about alignment
8.1 years ago by prasundutta87 ▴ 730
0
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1
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2.6k
views
Comment: C: detecting allele specific expression of a gene at a specific locus without havin
8.2 years ago by prasundutta87 ▴ 730
1
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0
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5.8k
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Comment: C: long reads Pacbio SNP calling
8.2 years ago by prasundutta87 ▴ 730
0
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1
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1.9k
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Comment: C: allelic unbalance for multiplex PCR based amplicon data
8.2 years ago by prasundutta87 ▴ 730
0
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1
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2.6k
views
Comment: C: detecting allele specific expression of a gene at a specific locus without havin
8.2 years ago by prasundutta87 ▴ 730
1
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5
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2.6k
views
detecting allele specific expression of a gene at a specific locus without having any information about parental genomes
RNA-Seq snp alignment gene
updated 8.2 years ago by ★ 1.6k • written 8.7 years ago by ▴ 730
261 results • Page 4 of 6
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