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Showing :
questions
19
votes
8
replies
17k
views
6 follow
Best Practices / Faster Samtools Mpileup, Any Tips?
samtools
mpileup
updated 4.1 years ago by
wulj2
▴ 50 • written 12.2 years ago by
Kevin
▴ 640
13
votes
3
replies
5.9k
views
Snps In Promoter Regions In Exome Sequencing?
exome
promoter
next-gen
sequencing
snp
updated 7.3 years ago by
Biostar
20 • written 13.3 years ago by
Kevin
▴ 640
2
votes
3
replies
9.9k
views
Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcftools
plink
vcf
ped
updated 7.5 years ago by
a.molkenov
• 0 • written 12.3 years ago by
Kevin
▴ 640
1
vote
1
reply
5.2k
views
How To Create Genome-Wide Estimation Of Ibd Sharing Using Plink From Tped Files?
plink
updated 9.1 years ago by
Biostar
20 • written 12.3 years ago by
Kevin
▴ 640
18
votes
27
replies
20k
views
20 follow
Where Can I Download Vcf Files For Publicly Available Data?
vcf
snp
updated 18 months ago by
Ram
44k • written 12.8 years ago by
Kevin
▴ 640
0
votes
1
reply
3.1k
views
Convert Illumina Human Hapmap 550 K Chip Manifest File From B36 To B37
illumina
updated 14 months ago by
Ram
44k • written 12.0 years ago by
Kevin
▴ 640
2
votes
4
replies
5.0k
views
Putting Run/Lane Info Back Into Readgroup For Gatk Pipeline
gatk
bam
updated 12.1 years ago by
Sean Davis
27k • written 12.1 years ago by
Kevin
▴ 640
8
votes
6
replies
4.5k
views
Bwa Aln -Q 15 When To Use It? What Does It Do?
bwa
trimming
updated 12.1 years ago by
Istvan Albert
101k • written 12.1 years ago by
Kevin
▴ 640
0
votes
1
reply
3.1k
views
Does A Large Variation In Insert Sizes For Paired End Illumina Sequencing Affect Snp Calling?
updated 12.2 years ago by
Istvan Albert
101k • written 12.2 years ago by
Kevin
▴ 640
12
votes
4
replies
12k
views
Fastest Way To Rename Sample Name In 37 Gb Gzipped Vcf File Or Binary Ped File
vcf
ped
bed
updated 21 months ago by
Ram
44k • written 12.2 years ago by
Kevin
▴ 640
0
votes
2
replies
4.2k
views
Is There A Tool To Combine Samtools / Sam File Bitwise Flags?
samtools
updated 12.6 years ago by
Christof Winter
★ 1.0k • written 12.6 years ago by
Kevin
▴ 640
20
votes
24
replies
5.4k
views
6 follow
Bigger Sample Sizes For Wgs Exome. Is Nosql The Way To Go? Or Bio Hdf
fastq
next-gen
sequencing
updated 12.6 years ago by
SES
8.6k • written 12.6 years ago by
Kevin
▴ 640
16
votes
3
replies
5.1k
views
How To Extract Snps From A Desired List Of Gene Names
disease
snp
updated 12.9 years ago by
Chris Penkett
▴ 490 • written 12.9 years ago by
Kevin
▴ 640
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