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19
votes
8
replies
19k
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6 follow
Best Practices / Faster Samtools Mpileup, Any Tips?
samtools mpileup
updated 5.2 years ago by ▴ 50 • written 13.3 years ago by ▴ 640
1
vote
1
reply
2.3k
views
Comment: C: Protocol for genome assembly of Sars-cov-2 sequences
5.3 years ago by Kevin ▴ 640
0
votes
0
replies
6.6k
views
Comment: C: Bigger Sample Sizes For Wgs Exome. Is Nosql The Way To Go? Or Bio Hdf
updated 6.1 years ago by 45k • written 13.7 years ago by ▴ 640
0
votes
0
replies
4.7k
views
Answer: A: Is There A Tool To Combine Samtools / Sam File Bitwise Flags?
updated 6.1 years ago by 45k • written 13.7 years ago by ▴ 640
3
votes
0
replies
4.9k
views
Answer: A: List Of All Known Regulatory Regions In Human Genome
updated 6.1 years ago by 45k • written 14.4 years ago by ▴ 640
1
vote
0
replies
14k
views
Answer: A: What Is The Most Memory-Efficient De Novo Assembler?
updated 6.1 years ago by 45k • written 14.5 years ago by ▴ 640
0
votes
0
replies
2.0k
views
Comment: A: Mira assembler with IonTorrent
6.4 years ago by Kevin ▴ 640
1
vote
0
replies
1.9k
views
Comment: A: Help in Gwas analysis
6.5 years ago by Kevin ▴ 640
1
vote
0
replies
2.5k
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Comment: A: parse of file multifasta in python
6.7 years ago by Kevin ▴ 640
0
votes
0
replies
2.6k
views
Answer: A: 16S rRNA classification pipeline
6.8 years ago by Kevin ▴ 640
1
vote
1
reply
3.6k
views
Answer: A: Pool Whole Genome Sequencing
7.3 years ago by Kevin ▴ 640
0
votes
0
replies
5.9k
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Comment: C: randomly subsampling a bam file three times
8.2 years ago by Kevin ▴ 640
13
votes
3
replies
6.7k
views
Snps In Promoter Regions In Exome Sequencing?
exome promoter next-gen sequencing snp
updated 8.4 years ago by 20 • written 14.4 years ago by ▴ 640
2
votes
3
replies
10k
views
Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcftools plink vcf ped
updated 8.7 years ago by • 0 • written 13.4 years ago by ▴ 640
0
votes
0
replies
3.6k
views
Answer: A: Where Can I Find Data Setnormal\Tumor Of Cancer?
9.0 years ago by Kevin ▴ 640
1
vote
1
reply
5.4k
views
How To Create Genome-Wide Estimation Of Ibd Sharing Using Plink From Tped Files?
plink
updated 10.2 years ago by 20 • written 13.4 years ago by ▴ 640
18
votes
27
replies
23k
views
20 follow
Where Can I Download Vcf Files For Publicly Available Data?
vcf snp
updated 2.6 years ago by 45k • written 13.9 years ago by ▴ 640
1
vote
0
replies
4.4k
views
Answer: A: 10Kb Reads From Illumina Hiseq
12.3 years ago by Kevin ▴ 640
0
votes
1
reply
3.3k
views
Convert Illumina Human Hapmap 550 K Chip Manifest File From B36 To B37
illumina
updated 2.3 years ago by 45k • written 13.1 years ago by ▴ 640
4
votes
0
replies
26k
views
Answer: A: Bioinformatics "Cheat Sheet"
updated 13.1 years ago by 103k • written 14.6 years ago by ▴ 640
0
votes
1
reply
19k
views
Answer: A: Best Practices / Faster Samtools Mpileup, Any Tips?
13.2 years ago by Kevin ▴ 640
0
votes
0
replies
9.1k
views
Comment: C: Split Bam Files By Region For Parallel Variant Calling
13.3 years ago by Kevin ▴ 640
0
votes
1
reply
5.5k
views
Comment: C: Putting Run/Lane Info Back Into Readgroup For Gatk Pipeline
13.3 years ago by Kevin ▴ 640
2
votes
4
replies
5.5k
views
Putting Run/Lane Info Back Into Readgroup For Gatk Pipeline
gatk bam
updated 13.3 years ago by 27k • written 13.3 years ago by ▴ 640
8
votes
6
replies
5.1k
views
Bwa Aln -Q 15 When To Use It? What Does It Do?
bwa trimming
updated 13.3 years ago by 103k • written 13.3 years ago by ▴ 640
0
votes
0
replies
5.1k
views
Comment: C: Bwa Aln -Q 15 When To Use It? What Does It Do?
13.3 years ago by Kevin ▴ 640
0
votes
0
replies
19k
views
Comment: C: Best Practices / Faster Samtools Mpileup, Any Tips?
13.3 years ago by Kevin ▴ 640
0
votes
1
reply
3.3k
views
Does A Large Variation In Insert Sizes For Paired End Illumina Sequencing Affect Snp Calling?
updated 13.3 years ago by 103k • written 13.3 years ago by ▴ 640
0
votes
0
replies
3.0k
views
Answer: A: Rare Variant Simulation
13.4 years ago by Kevin ▴ 640
12
votes
4
replies
13k
views
Fastest Way To Rename Sample Name In 37 Gb Gzipped Vcf File Or Binary Ped File
vcf ped bed
updated 2.9 years ago by 45k • written 13.4 years ago by ▴ 640
13
votes
1
reply
31k
views
Answer: A: Is There Any R Or R / Bioconductor Package That Can Make Circular Plots Like Per
13.7 years ago by Kevin ▴ 640
0
votes
2
replies
4.7k
views
Is There A Tool To Combine Samtools / Sam File Bitwise Flags?
samtools
updated 13.7 years ago by ★ 1.1k • written 13.7 years ago by ▴ 640
0
votes
0
replies
6.6k
views
Comment: C: Bigger Sample Sizes For Wgs Exome. Is Nosql The Way To Go? Or Bio Hdf
13.7 years ago by Kevin ▴ 640
0
votes
0
replies
6.4k
views
Comment: C: Concordance Of Ngs Data To Wg Snp Array Data
13.7 years ago by Kevin ▴ 640
0
votes
0
replies
70k
views
Answer: A: How To Efficiently Parse A Huge Fastq File?
13.7 years ago by Kevin ▴ 640
0
votes
0
replies
90k
views
Comment: C: Drawing Chromosome Ideogams With Data
13.7 years ago by Kevin ▴ 640
0
votes
0
replies
26k
views
Comment: C: Bioinformatics "Cheat Sheet"
13.7 years ago by Kevin ▴ 640
20
votes
24
replies
6.6k
views
6 follow
Bigger Sample Sizes For Wgs Exome. Is Nosql The Way To Go? Or Bio Hdf
fastq next-gen sequencing
updated 13.7 years ago by 8.6k • written 13.7 years ago by ▴ 640
0
votes
0
replies
23k
views
Comment: C: Where Can I Download Vcf Files For Publicly Available Data?
13.8 years ago by Kevin ▴ 640
1
vote
0
replies
7.0k
views
Answer: A: Read/Write Throughput Of Bioinformatics Storage
13.9 years ago by Kevin ▴ 640
2
votes
0
replies
33k
views
Answer: A: Human Exome Capture Library Coordinates Download
14.0 years ago by Kevin ▴ 640
16
votes
3
replies
5.6k
views
How To Extract Snps From A Desired List Of Gene Names
disease snp
updated 14.0 years ago by ▴ 490 • written 14.0 years ago by ▴ 640
2
votes
1
reply
5.6k
views
Answer: A: How To Know The Amino Acid Switch That A Snp Caused
updated 14.5 years ago by 11k • written 14.5 years ago by ▴ 640
1
vote
0
replies
13k
views
Answer: A: How Can I Batch Blast Sequences To Identify Them?
14.6 years ago by Kevin ▴ 640
1
vote
2
replies
5.0k
views
Answer: A: Snp Number From Whole-Genome Sequencing
14.6 years ago by Kevin ▴ 640
1
vote
2
replies
77k
views
Answer: A: What Is The Best Pipeline For Human Whole Exome Sequencing?
15.4 years ago by Kevin ▴ 640
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