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3
votes
1
reply
2.7k
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Will mitochondria DNA affect the sequencing in ATAC-seq?
ATAC-seq
updated 7.6 years ago by 90k • written 7.8 years ago by ▴ 50
2
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0
replies
3.9k
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Answer: A: ngsplot - how to plot enrichment across TSSs of a list of genes instead of all T
8.0 years ago by ghostforever.shi ▴ 50
0
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0
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7.2k
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Comment: C: How does MACS algorithm work on ATAC-seq data if there is no control sample and
8.0 years ago by ghostforever.shi ▴ 50
0
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0
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1.7k
views
Answer: A: ChIP-seq: Why MACS doesn't apply tag shifting to the control sample?
8.0 years ago by ghostforever.shi ▴ 50
0
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1
reply
7.2k
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Comment: C: How does MACS algorithm work on ATAC-seq data if there is no control sample and
8.0 years ago by ghostforever.shi ▴ 50
0
votes
1
reply
7.2k
views
Comment: C: How does MACS algorithm work on ATAC-seq data if there is no control sample and
8.0 years ago by ghostforever.shi ▴ 50
0
votes
0
replies
2.1k
views
Answer: A: chipseq, how to create the density plot with real length of gene
8.3 years ago by ghostforever.shi ▴ 50
0
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0
replies
11k
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Comment: C: filtering paired end mapped reads form SAM/BAM file
8.3 years ago by ghostforever.shi ▴ 50
0
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0
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2.0k
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Comment: C: About the differences of index-building process between Bowtie and BWA
8.3 years ago by ghostforever.shi ▴ 50
1
vote
3
replies
1.9k
views
A error occurred in the ngsplot analysis.
ChIP-Seq
updated 8.3 years ago by 20 • written 8.4 years ago by ▴ 50
0
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0
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13k
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Comment: A: Download SAM/BAM files from SRA takes ages!!!
8.3 years ago by ghostforever.shi ▴ 50
0
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2
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2.0k
views
About the differences of index-building process between Bowtie and BWA
alignment next-gen
updated 8.3 years ago by 105k • written 8.3 years ago by ▴ 50
0
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0
replies
1.2k
views
How BWA count the occurrence array?
alignment
8.3 years ago by ghostforever.shi ▴ 50
0
votes
1
reply
2.7k
views
Comment: C: About the reads aligned 0 times (around 10%) in Bowtie2.
8.3 years ago by ghostforever.shi ▴ 50
6
votes
4
replies
2.7k
views
About the reads aligned 0 times (around 10%) in Bowtie2.
ChIP-Seq SNP
updated 8.3 years ago by 8.9k • written 8.3 years ago by ▴ 50
0
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1
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1.9k
views
Comment: C: A error occurred in the ngsplot analysis.
8.4 years ago by ghostforever.shi ▴ 50
0
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0
replies
4.3k
views
Comment: C: I have a problem when I am using the bedGraphToBigWig.
8.4 years ago by ghostforever.shi ▴ 50
0
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1
reply
4.3k
views
Comment: C: I have a problem when I am using the bedGraphToBigWig.
updated 8.4 years ago by 154k • written 8.4 years ago by ▴ 50
0
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1
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4.3k
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Comment: C: I have a problem when I am using the bedGraphToBigWig.
8.4 years ago by ghostforever.shi ▴ 50
0
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0
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4.3k
views
Comment: C: I have a problem when I am using the bedGraphToBigWig.
8.4 years ago by ghostforever.shi ▴ 50
0
votes
1
reply
4.3k
views
Comment: C: I have a problem when I am using the bedGraphToBigWig.
8.4 years ago by ghostforever.shi ▴ 50
2
votes
10
replies
4.3k
views
I have a problem when I am using the bedGraphToBigWig.
ChIP-Seq
8.4 years ago by ghostforever.shi ▴ 50
0
votes
0
replies
1.4k
views
Comment: C: About the control choice in a ChIP-experiment.
8.5 years ago by ghostforever.shi ▴ 50
5
votes
2
replies
1.4k
views
About the control choice in a ChIP-experiment.
ChIP-Seq
updated 8.5 years ago by 105k • written 8.5 years ago by ▴ 50
2
votes
1
reply
1.4k
views
Why CEAS occur ValueError: invalid literal for int() with base 10: ?
ChIP-Seq
8.5 years ago by ghostforever.shi ▴ 50
0
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0
replies
4.2k
views
Comment: C: Don't know how to analysis the downloaded data from ENCODE project, including ts
8.7 years ago by ghostforever.shi ▴ 50
0
votes
1
reply
4.2k
views
Comment: C: Don't know how to analysis the downloaded data from ENCODE project, including ts
8.7 years ago by ghostforever.shi ▴ 50
1
vote
4
replies
4.2k
views
Don't know how to analysis the downloaded data from ENCODE project, including tsv file about gene quantification and transcript quantification
RNA-Seq
8.7 years ago by ghostforever.shi ▴ 50
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