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5
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1
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1.1k
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Answer: A: What is a better strategy for finding novel transcripts?
3.2 years ago by Amitm ★ 2.1k
0
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0
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2.7k
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Answer: A: What is the state of multi-omics dataset ?
updated 3.2 years ago by 38k • written 7.1 years ago by ★ 2.1k
0
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1
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2.8k
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Comment: C: Ballgown plotTranscripts function
updated 3.2 years ago by 38k • written 7.1 years ago by ★ 2.1k
1
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0
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10k
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Answer: C: how to download gene annotation bed file from ensembl?
updated 3.2 years ago by 38k • written 7.1 years ago by ★ 2.1k
1
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0
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2.4k
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Comment: C: analyzing RNAseq data in cytoscape
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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2
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2.4k
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Comment: Comment: analyzing RNAseq data in cytoscape
updated 10 months ago by 38k • written 7.2 years ago by ★ 2.1k
1
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0
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2.3k
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Answer: A: Agilent SureSelect design miss some target regions
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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2
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2.4k
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Comment: C: Could you explain the percentage of A, C , G, T in hg19 ?
updated 3.2 years ago by 38k • written 7.2 years ago by ★ 2.1k
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1
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3.1k
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Answer: C: Obtaining length and %GC of genes using Biomart
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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8.5k
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Comment: Comment: Calculating Mapping Coverage
updated 17 months ago by 38k • written 7.2 years ago by ★ 2.1k
1
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0
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7.0k
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Answer: A: RefSeq Ids(NM*, NR*) to ensemble transcript Ids (ENST*)
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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2.7k
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Comment: C: Somatic allele frequency from TCGA in non-coding DNA
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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2.7k
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Comment: C: Somatic allele frequency from TCGA in non-coding DNA
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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2.1k
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Comment: C: co-expression of genes in normal and cancer
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
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0
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2.7k
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Comment: C: htseq-count produces no features amid alignment
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
2
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1
reply
13k
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Comment: C: How to efficiently remove a list of reads from BAM file?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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1
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2.3k
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Comment: C: Pipeline for RNA-seq analysis
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
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0
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6.3k
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Answer: A: Intersect multiple BED files
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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1.5k
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Comment: C: new gene discovery
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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2
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10k
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Comment: C: MarkDuplicates memory issue
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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1.2k
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Comment: C: Download multiple RNAseq experiments
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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4.2k
views
Comment: A: Can I use sorted bam files from STAR with Stringtie?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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0
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4.2k
views
Answer: A: Can I use sorted bam files from STAR with Stringtie?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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1
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4.1k
views
Comment: C: how to add a pseduo gene into a GTF file?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
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0
replies
4.2k
views
Comment: C: How can I detect lncRNA?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
vote
1
reply
4.2k
views
Answer: A: How can I detect lncRNA?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
0
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1
reply
4.1k
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Comment: C: Fusion gene detection software
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
1
vote
1
reply
4.1k
views
Answer: A: Fusion gene detection software
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 2.1k
2
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1
reply
2.8k
views
Answer: A: RNA Expression Transcript Level Collapse
updated 3.4 years ago by 38k • written 7.8 years ago by ★ 2.1k
0
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0
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2.9k
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Comment: C: faster variant annotation for large VCFs
4.5 years ago by Amitm ★ 2.1k
0
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0
replies
3.3k
views
Comment: C: I can't convert the sam file to fastq file.
updated 4.5 years ago by 38k • written 7.1 years ago by ★ 2.1k
1
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1
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3.0k
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Comment: C: How can get MAF for set of SNPs from each population based on 1000 Genome?
updated 4.5 years ago by 84k • written 7.1 years ago by ★ 2.1k
1
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0
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3.0k
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Comment: C: How can get MAF for set of SNPs from each population based on 1000 Genome?
updated 4.5 years ago by 84k • written 7.1 years ago by ★ 2.1k
0
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0
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2.9k
views
Comment: C: faster variant annotation for large VCFs
4.5 years ago by Amitm ★ 2.1k
0
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0
replies
3.9k
views
Comment: C: Pipeline of structural variation calling using multiple tools for multiple sampl
updated 4.5 years ago by 38k • written 7.1 years ago by ★ 2.1k
1
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1
reply
2.9k
views
Comment: C: Can RNA-Seq be Used to Predict Non-Synonymous Mutational Load in a Non-Matched S
updated 4.5 years ago by 38k • written 7.1 years ago by ★ 2.1k
3
votes
8
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2.9k
views
faster variant annotation for large VCFs
vcf variant annotation WGS
updated 4.6 years ago by 23k • written 4.6 years ago by ★ 2.1k
0
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1
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2.9k
views
Comment: C: faster variant annotation for large VCFs
4.6 years ago by Amitm ★ 2.1k
0
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0
replies
4.8k
views
Comment: C: Removing everything after the last underscore in the header of a fastafile
4.6 years ago by Amitm ★ 2.1k
0
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1
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4.8k
views
Answer: A: Removing everything after the last underscore in the header of a fastafile
4.6 years ago by Amitm ★ 2.1k
1
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2
replies
6.0k
views
Answer: C: GISTIC input parameters.
4.6 years ago by Amitm ★ 2.1k
0
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1
reply
1.2k
views
Comment: C: Error : run cnvkit from bam
4.6 years ago by Amitm ★ 2.1k
0
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1
reply
1.2k
views
Comment: C: Error : run cnvkit from bam
4.6 years ago by Amitm ★ 2.1k
1
vote
1
reply
1.2k
views
Comment: C: Error : run cnvkit from bam
4.6 years ago by Amitm ★ 2.1k
3
votes
1
reply
1.7k
views
Answer: A: Different results for differentially expressed genes in RNA-seq analysis with cu
4.6 years ago by Amitm ★ 2.1k
0
votes
0
replies
822
views
Answer: A: What is a good way to compare the WES and panel seq results from the same set of
4.6 years ago by Amitm ★ 2.1k
0
votes
0
replies
956
views
Comment: C: Installation error pindel
4.6 years ago by Amitm ★ 2.1k
0
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1
reply
3.0k
views
Comment: C: FPKM matrix after stringtie using ballgown
4.6 years ago by Amitm ★ 2.1k
0
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1
reply
3.0k
views
Comment: C: FPKM matrix after stringtie using ballgown
4.6 years ago by Amitm ★ 2.1k
0
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1
reply
3.0k
views
Comment: C: FPKM matrix after stringtie using ballgown
4.6 years ago by Amitm ★ 2.1k
271 results • Page 2 of 6
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