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4
votes
2
replies
12k
views
Answer: A: Going From Cigar String In Sam To Genomic Coordinates?
updated 7.2 years ago by 45k • written 15.3 years ago by 12k
0
votes
0
replies
35k
views
Comment: C: C/C++ Libraries For Bioinformatics?
updated 7.2 years ago by 45k • written 14.6 years ago by 12k
8
votes
1
reply
28k
views
Answer: A: How To Map A Snp To A Gene Around +/- 60Kb ?
updated 7.2 years ago by 45k • written 15.3 years ago by 12k
1
vote
0
replies
2.7k
views
Answer: A: Expanding Genomic Coordinates Using Bedtools
7.4 years ago by Aaronquinlan 12k
4
votes
1
reply
27k
views
Comment: C: What Is A .Ptt File And How It Is Created?
updated 7.5 years ago by 35k • written 13.8 years ago by 12k
15
votes
19
replies
11k
views
6 follow
Tool: Gemini: Integrative Exploration Of Genetic Variation And Genome Annotations
vcf database genome variation
updated 2.4 years ago by 45k • written 12.5 years ago by 12k
1
vote
1
reply
4.8k
views
Answer: A: how to randomly select intervals of different lengths (not records) from a BED f
8.4 years ago by Aaronquinlan 12k
37
votes
7
replies
16k
views
6 follow
What Python Libraries Exist For Drawing Genes/Features/Intervals?
visualization python api
updated 8.6 years ago by 20 • written 14.0 years ago by 12k
15
votes
2
replies
3.7k
views
Tutorial: Introduction to bedtools.
bedtools
updated 2.7 years ago by 45k • written 11.0 years ago by 12k
7
votes
1
reply
3.0k
views
Job: [Quinlan Lab] Postdoc or Staff Scientist in Rare Human Disease Research
rare-disease human-genetics
updated 2.6 years ago by 45k • written 9.5 years ago by 12k
0
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0
replies
3.0k
views
Comment: C: [Quinlan Lab] Postdoctoral Fellow in Rare Human Disease Research
9.4 years ago by Aaronquinlan 12k
2
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0
replies
6.5k
views
Answer: A: coverageBed: what am I doing wrong?
updated 9.7 years ago by 105k • written 9.7 years ago by 12k
64
votes
19
replies
24k
views
12 follow
What Ngs Read Simulators Are Available For Paired-End Data?
next-gen sequencing fastq simulation paired
updated 3.0 years ago by 45k • written 15.2 years ago by 12k
4
votes
0
replies
8.4k
views
Answer: A: bedtools genomecov .genome file usage
10.7 years ago by Aaronquinlan 12k
1
vote
0
replies
2.7k
views
Comment: Comment: bedtools probelm of syntax
updated 3.5 years ago by 45k • written 10.7 years ago by 12k
3
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2
replies
2.7k
views
Answer: Answer: bedtools probelm of syntax
updated 3.5 years ago by 45k • written 10.7 years ago by 12k
8
votes
1
reply
6.9k
views
Answer: Answer: Does multiIntersectBed works with -u and -f parameter?
updated 3.6 years ago by 45k • written 10.8 years ago by 12k
1
vote
1
reply
20k
views
Comment: C: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
10.8 years ago by Aaronquinlan 12k
1
vote
1
reply
20k
views
Comment: C: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
10.8 years ago by Aaronquinlan 12k
0
votes
1
reply
3.5k
views
Comment: Comment: Dfference between intersectBed and multiIntersectBed
updated 3.6 years ago by 45k • written 10.8 years ago by 12k
1
vote
1
reply
16k
views
Comment: C: Calculating GC content from BAM file by BED file
10.9 years ago by Aaronquinlan 12k
1
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0
replies
16k
views
Comment: Comment: Calculating GC content from BAM file by BED file
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
4
votes
2
replies
16k
views
Answer: Answer: Calculating GC content from BAM file by BED file
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
2
votes
1
reply
11k
views
Answer: Answer: Bedtools genomecov to identify regions at any coverage
updated 3.7 years ago by 45k • written 10.9 years ago by 12k
0
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0
replies
2.8k
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Comment: C: Bed_intersect -s empty output
10.9 years ago by Aaronquinlan 12k
0
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1
reply
2.8k
views
Answer: A: Bed_intersect -s empty output
11.0 years ago by Aaronquinlan 12k
0
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2
replies
5.4k
views
Comment: C: Filter VCFs with ExAC data
11.0 years ago by Aaronquinlan 12k
0
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0
replies
4.9k
views
Comment: Comment: Why does BedTools Map operation produce all dots as output?
updated 3.7 years ago by 45k • written 11.0 years ago by 12k
0
votes
1
reply
11k
views
Comment: C: Gemini: Integrative Exploration Of Genetic Variation And Genome Annotations
11.0 years ago by Aaronquinlan 12k
0
votes
1
reply
11k
views
Comment: C: Gemini: Integrative Exploration Of Genetic Variation And Genome Annotations
11.0 years ago by Aaronquinlan 12k
8
votes
1
reply
5.9k
views
Answer: Answer: converting bed file to heatmap data
updated 3.8 years ago by 45k • written 11.0 years ago by 12k
1
vote
1
reply
5.4k
views
Comment: Comment: Filter VCFs with ExAC data
updated 3.8 years ago by 45k • written 11.0 years ago by 12k
2
votes
0
replies
5.1k
views
Answer: Answer: Variant annotation using several .BED files
updated 4.6 years ago by 45k • written 11.0 years ago by 12k
0
votes
0
replies
14k
views
Comment: Comment: bedtools 2.0 merge - "unable to open file or unable to determine types"
updated 3.8 years ago by 45k • written 11.1 years ago by 12k
0
votes
2
replies
17k
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Comment: Comment: Checking kinship coefficients and relationships and comparing genotyping data to
updated 3.9 years ago by 45k • written 11.2 years ago by 12k
2
votes
0
replies
4.2k
views
Answer: Answer: how to get -nms for bedtools
updated 3.9 years ago by 45k • written 11.2 years ago by 12k
1
vote
0
replies
4.2k
views
Comment: Comment: how to get -nms for bedtools
updated 3.9 years ago by 45k • written 11.2 years ago by 12k
0
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1
reply
4.9k
views
Comment: C: Random shuffling of features leaving gene models intact
11.5 years ago by Aaronquinlan 12k
0
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1
reply
4.9k
views
Comment: C: Random shuffling of features leaving gene models intact
11.5 years ago by Aaronquinlan 12k
0
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0
replies
4.9k
views
Comment: C: Random shuffling of features leaving gene models intact
11.5 years ago by Aaronquinlan 12k
0
votes
1
reply
8.0k
views
Comment: C: Bed File Of Mapq Sliding Window On A Bam File?
11.7 years ago by Aaronquinlan 12k
0
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1
reply
8.0k
views
Comment: C: Bed File Of Mapq Sliding Window On A Bam File?
11.7 years ago by Aaronquinlan 12k
0
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1
reply
8.0k
views
Comment: C: Bed File Of Mapq Sliding Window On A Bam File?
11.7 years ago by Aaronquinlan 12k
4
votes
1
reply
8.0k
views
Answer: A: Bed File Of Mapq Sliding Window On A Bam File?
11.7 years ago by Aaronquinlan 12k
5
votes
1
reply
8.5k
views
Answer: A: Separate Bed File To Each 60Kb Bins
11.7 years ago by Aaronquinlan 12k
0
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0
replies
8.5k
views
Comment: C: Separate Bed File To Each 60Kb Bins
11.7 years ago by Aaronquinlan 12k
14
votes
5
replies
12k
views
Answer: A: Compute Binned Gc-Normalized Read Counts From Bam File
11.7 years ago by Aaronquinlan 12k
0
votes
0
replies
12k
views
Comment: C: Compute Binned Gc-Normalized Read Counts From Bam File
11.7 years ago by Aaronquinlan 12k
3
votes
0
replies
4.2k
views
Answer: A: Is It Possible To Filter Only Bookend Reads From A Bed File?
11.8 years ago by Aaronquinlan 12k
0
votes
0
replies
6.9k
views
Comment: C: Bedgraph Not Displayed In Igv
11.8 years ago by Aaronquinlan 12k
369 results • Page 2 of 8
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