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4
votes
6
replies
5.1k
views
Issues installing Pindel from git
software error pindel
updated 4.1 years ago by • 0 • written 8.0 years ago by ▴ 100
0
votes
2
replies
2.6k
views
VarDict Amplicon-Aware Calling with barcoded seq data
variant calling next-gen molecular barcode
updated 6.2 years ago by 20 • written 7.9 years ago by ▴ 100
8
votes
8
replies
6.7k
views
6 follow
Keep Format and Individual fields when annotating VCF with VEP
vcf annotation VEP variant-calling
updated 7.2 years ago by ▴ 10 • written 7.5 years ago by ▴ 100
11
votes
11
replies
9.3k
views
Making UpSetR plot with title
plot R UpSetR
updated 7.5 years ago by ▴ 20 • written 8.0 years ago by ▴ 100
1
vote
6
replies
3.4k
views
hg19 or hg38 for variant calling
genome variant calling Assembly
updated 7.7 years ago by 35k • written 7.7 years ago by ▴ 100
0
votes
0
replies
3.4k
views
Comment: C: hg19 or hg38 for variant calling
7.7 years ago by jsneaththompson ▴ 100
0
votes
0
replies
3.4k
views
Comment: C: hg19 or hg38 for variant calling
7.7 years ago by jsneaththompson ▴ 100
0
votes
0
replies
2.6k
views
Comment: C: VarDict Amplicon-Aware Calling with barcoded seq data
7.9 years ago by jsneaththompson ▴ 100
0
votes
1
reply
9.3k
views
Comment: C: Making UpSetR plot with title
8.0 years ago by jsneaththompson ▴ 100
0
votes
0
replies
9.3k
views
Comment: C: Making UpSetR plot with title
8.0 years ago by jsneaththompson ▴ 100
0
votes
0
replies
9.3k
views
Comment: C: Making UpSetR plot with title
8.0 years ago by jsneaththompson ▴ 100
1
vote
0
replies
9.0k
views
Comment: C: Alternatives to Venn Diagrams
8.0 years ago by jsneaththompson ▴ 100
9
votes
4
replies
9.0k
views
Alternatives to Venn Diagrams
plots venn diagram
updated 8.0 years ago by 6.7k • written 8.0 years ago by ▴ 100
11
votes
2
replies
8.8k
views
Using GATK's HaplotypeCaller or Mutect2 for somatic cancer samples with no normal panel
variant calling gatk somatic variant
updated 8.0 years ago by 27k • written 8.0 years ago by ▴ 100
2
votes
1
reply
5.1k
views
Answer: A: Issues installing Pindel from git
8.0 years ago by jsneaththompson ▴ 100
0
votes
0
replies
1.6k
views
Minimum base quality for Pindel
pindel variant calling next-gen
8.2 years ago by jsneaththompson ▴ 100
5
votes
4
replies
4.2k
views
Soft-clipping of reads in Amplicon-sequenced data
alignment soft-clipping amplicon
updated 8.2 years ago by ▴ 60 • written 8.2 years ago by ▴ 100
0
votes
0
replies
4.2k
views
Comment: C: Soft-clipping of reads in Amplicon-sequenced data
8.2 years ago by jsneaththompson ▴ 100
1
vote
1
reply
2.1k
views
What do outlined reads in IGV represent?
IGV alignment next-gen
updated 8.3 years ago by 5.9k • written 8.3 years ago by ▴ 100
0
votes
1
reply
3.9k
views
Comment: C: Connor Deduplication - AttributeError: 'module' object has no attribute 'Alignme
8.3 years ago by jsneaththompson ▴ 100
0
votes
1
reply
3.9k
views
Comment: C: Connor Deduplication - AttributeError: 'module' object has no attribute 'Alignme
8.3 years ago by jsneaththompson ▴ 100
0
votes
1
reply
3.9k
views
Comment: C: Connor Deduplication - AttributeError: 'module' object has no attribute 'Alignme
8.3 years ago by jsneaththompson ▴ 100
0
votes
1
reply
3.9k
views
Comment: C: Connor Deduplication - AttributeError: 'module' object has no attribute 'Alignme
8.3 years ago by jsneaththompson ▴ 100
0
votes
9
replies
3.9k
views
Connor Deduplication - AttributeError: 'module' object has no attribute 'AlignmentFile'
deduplication barcoding alignment connor
8.3 years ago by jsneaththompson ▴ 100
0
votes
0
replies
3.1k
views
Comment: C: Pindel and GATK AD Concordance
8.4 years ago by jsneaththompson ▴ 100
2
votes
2
replies
3.1k
views
Pindel and GATK AD Concordance
Pindel Variant Calling Allele Depth GATK
updated 8.4 years ago by 7.3k • written 8.4 years ago by ▴ 100
0
votes
3
replies
4.5k
views
Depth of coverage in Bam file does not match depth in VCF file
Pindel InDel IGV Coverage Variant Calling
updated 8.5 years ago by ★ 4.7k • written 8.5 years ago by ▴ 100
27 results • Page 1 of 1
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