Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
243
views
Answer: Answer: fail to download data from seurat
5 days ago by yura.grabovska ▴ 600
0
votes
1
reply
201
views
Comment: Comment: xCell output and immune cell ratio
9 days ago by yura.grabovska ▴ 600
1
vote
1
reply
183
views
What's going on with Ensembl?
biomaRt ensembl
updated 11 days ago by 147k • written 11 days ago by ▴ 600
1
vote
1
reply
321
views
Answer: Answer: getMappedEntrezIDs from missmethyl package R
15 days ago by yura.grabovska ▴ 600
1
vote
1
reply
297
views
Comment: Comment: Feature Selection for DNA methylation data
15 days ago by yura.grabovska ▴ 600
0
votes
0
replies
458
views
Comment: Comment: Differential expression analysis between groups with varying cell proportions
17 days ago by yura.grabovska ▴ 600
1
vote
1
reply
458
views
Comment: Comment: Differential expression analysis between groups with varying cell proportions
17 days ago by yura.grabovska ▴ 600
1
vote
1
reply
471
views
Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
17 days ago by yura.grabovska ▴ 600
1
vote
0
replies
191
views
Comment: Comment: Good Dotplots for homogenous data (Seurat)
17 days ago by yura.grabovska ▴ 600
1
vote
1
reply
471
views
Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
21 days ago by yura.grabovska ▴ 600
1
vote
1
reply
251
views
Comment: Comment: Cell cluster that mainly consists of doublet.
21 days ago by yura.grabovska ▴ 600
0
votes
0
replies
204
views
Comment: Comment: CCLE Cell lines annotations
23 days ago by yura.grabovska ▴ 600
0
votes
1
reply
360
views
Comment: Comment: 0-based or 1-based file format using R pipeline?
23 days ago by yura.grabovska ▴ 600
0
votes
1
reply
360
views
Comment: Comment: 0-based or 1-based file format using R pipeline?
23 days ago by yura.grabovska ▴ 600
0
votes
1
reply
241
views
Answer: Answer: Appropriate minimum gene set size for gene set enrichment analysis
24 days ago by yura.grabovska ▴ 600
0
votes
1
reply
182
views
Seurat Xenium QC
R Xenium spatial Seurat
updated 24 days ago by 5.8k • written 24 days ago by ▴ 600
0
votes
0
replies
323
views
Comment: Comment: cnvpytor run problem
24 days ago by yura.grabovska ▴ 600
0
votes
1
reply
323
views
Answer: Answer: cnvpytor run problem
25 days ago by yura.grabovska ▴ 600
1
vote
1
reply
463
views
Answer: Answer: PCA for count data
25 days ago by yura.grabovska ▴ 600
1
vote
0
replies
341
views
Comment: Comment: Removing features from RNA assay in seurat
4 weeks ago by yura.grabovska ▴ 600
1
vote
1
reply
341
views
Comment: Comment: Removing features from RNA assay in seurat
4 weeks ago by yura.grabovska ▴ 600
1
vote
0
replies
1.8k
views
Comment: Comment: Center multiple pheatmap
4 weeks ago by yura.grabovska ▴ 600
0
votes
1
reply
1.8k
views
Comment: Comment: Center multiple pheatmap
4 weeks ago by yura.grabovska ▴ 600
2
votes
0
replies
377
views
Comment: Comment: creat histogram in R
4 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
226
views
Comment: Comment: Course: Single-cell RNA-seq analysis with R/Bioconductor
4 weeks ago by yura.grabovska ▴ 600
1
vote
1
reply
363
views
Comment: Comment: GSVA with a genelist on a "per-cluster" basis
4 weeks ago by yura.grabovska ▴ 600
1
vote
1
reply
363
views
Answer: Answer: GSVA with a genelist on a "per-cluster" basis
4 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
390
views
Comment: Comment: Error function vst in DESeq2
4 weeks ago by yura.grabovska ▴ 600
1
vote
1
reply
371
views
Answer: Answer: Using scRNA-seq to draw concrete evidence about transitional cluster
5 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
712
views
Answer: Answer: Error in pheatmap 'Error in hclust(d, method = method) : must have n >= 2 object
5 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
229
views
Answer: Answer: filter genes for differential gene expression
5 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
152
views
CODEX/Phenocycler -> QuPath -> Seurat pipeline basic help needed
QuPath CODEX Seurat Phenocycler
5 weeks ago by yura.grabovska ▴ 600
2
votes
1
reply
753
views
Understanding behaviour of SCTransform in Seurat
Seurat scRNASeq normalization
updated 6 weeks ago by • 0 • written 5 months ago by ▴ 600
0
votes
1
reply
467
views
Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
7 weeks ago by yura.grabovska ▴ 600
0
votes
1
reply
467
views
Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
7 weeks ago by yura.grabovska ▴ 600
0
votes
6
replies
467
views
Best practice for gene ontology/pathway/geneset enrichment in 10x data
R Seurat scRNA
updated 7 weeks ago by ★ 18k • written 7 weeks ago by ▴ 600
0
votes
0
replies
533
views
Comment: Comment: Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevan
7 weeks ago by yura.grabovska ▴ 600
0
votes
1
reply
918
views
Comment: Comment: Can't reproduce harmony results in Seurat
8 weeks ago by yura.grabovska ▴ 600
0
votes
1
reply
918
views
Comment: Comment: Can't reproduce harmony results in Seurat
8 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
533
views
Answer: Answer: Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevan
8 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
570
views
Comment: Comment: Weird outcomes from employing NMF on scRNA-seq data
8 weeks ago by yura.grabovska ▴ 600
1
vote
0
replies
918
views
Comment: Comment: Can't reproduce harmony results in Seurat
8 weeks ago by yura.grabovska ▴ 600
0
votes
1
reply
918
views
Answer: Answer: Can't reproduce harmony results in Seurat
8 weeks ago by yura.grabovska ▴ 600
3
votes
0
replies
349
views
Comment: Comment: Weird looking volcano plot
8 weeks ago by yura.grabovska ▴ 600
1
vote
2
replies
570
views
Answer: Answer: Weird outcomes from employing NMF on scRNA-seq data
8 weeks ago by yura.grabovska ▴ 600
1
vote
0
replies
491
views
Answer: Answer: Statistics of methylation experiments
8 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
381
views
Answer: Answer: Using findmarker of seurat with different test.use but getting the same resulat.
10 weeks ago by yura.grabovska ▴ 600
1
vote
0
replies
646
views
Comment: Comment: Calling variants/SNP for single-cell RNA-seq data
10 weeks ago by yura.grabovska ▴ 600
0
votes
0
replies
433
views
Comment: Comment: How to convert h5ad object to rds object without raw counts?
3 months ago by yura.grabovska ▴ 600
0
votes
1
reply
433
views
Comment: Comment: How to convert h5ad object to rds object without raw counts?
3 months ago by yura.grabovska ▴ 600
114 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6