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Comment: Comment: How to retain interactive plots from Glimma in R Markdown HTML Document
2 days ago by yura.grabovska ▴ 690
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212
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Comment: Comment: How to retain interactive plots from Glimma in R Markdown HTML Document
2 days ago by yura.grabovska ▴ 690
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281
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Comment: Comment: New scRNA-seq analysis software - Web-base - No coding needed
4 days ago by yura.grabovska ▴ 690
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122
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Seurat/Signac multiome analysis filtering on nCounts instead of nFeatures
10x Signac Seurat multiome
4 days ago by yura.grabovska ▴ 690
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223
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Answer: Answer: What is the difference between the SCT data stored in data and scale.data in Seu
4 days ago by yura.grabovska ▴ 690
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701
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Comment: Comment: best practices for integrating
5 days ago by yura.grabovska ▴ 690
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1
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349
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Comment: Comment: Could Anyone Help Me with Seurat code
10 days ago by yura.grabovska ▴ 690
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189
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Comment: Comment: Unable to link peaks to genes for multiomics data
11 days ago by yura.grabovska ▴ 690
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229
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Comment: Comment: Need help with fgsea
11 days ago by yura.grabovska ▴ 690
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2
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229
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Comment: Comment: Need help with fgsea
11 days ago by yura.grabovska ▴ 690
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349
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Comment: Comment: Could Anyone Help Me with Seurat code
11 days ago by yura.grabovska ▴ 690
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677
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
11 days ago by yura.grabovska ▴ 690
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677
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
15 days ago by yura.grabovska ▴ 690
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1
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677
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
16 days ago by yura.grabovska ▴ 690
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1
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305
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Comment: Comment: I encountered some problem while using bitr() for gene ID transversion.
18 days ago by yura.grabovska ▴ 690
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411
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Comment: Comment: Create Oncoprint with ggplot2
19 days ago by yura.grabovska ▴ 690
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491
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What's going on with Ensembl?
biomaRt ensembl
updated 23 days ago by ▴ 170 • written 5 weeks ago by ▴ 690
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395
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Comment: Comment: How to install deconstructSigs in R
24 days ago by yura.grabovska ▴ 690
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477
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Comment: Comment: Changing label geom_text in ggplot
24 days ago by yura.grabovska ▴ 690
2
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1
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477
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Answer: Answer: Changing label geom_text in ggplot
24 days ago by yura.grabovska ▴ 690
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423
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Answer: Answer: TCGA Methylation Beta and Gene Expression Help
25 days ago by yura.grabovska ▴ 690
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306
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Comment: Comment: cellranger error - insufficient disc space allocated to cellranger
26 days ago by yura.grabovska ▴ 690
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277
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Comment: Comment: Pigeon make-seurat produces empty output
26 days ago by yura.grabovska ▴ 690
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290
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Answer: Answer: fail to download data from seurat
4 weeks ago by yura.grabovska ▴ 690
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1
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245
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Comment: Comment: xCell output and immune cell ratio
5 weeks ago by yura.grabovska ▴ 690
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1
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379
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Answer: Answer: getMappedEntrezIDs from missmethyl package R
6 weeks ago by yura.grabovska ▴ 690
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1
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344
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Comment: Comment: Feature Selection for DNA methylation data
6 weeks ago by yura.grabovska ▴ 690
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555
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Comment: Comment: Differential expression analysis between groups with varying cell proportions
6 weeks ago by yura.grabovska ▴ 690
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1
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555
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Comment: Comment: Differential expression analysis between groups with varying cell proportions
6 weeks ago by yura.grabovska ▴ 690
1
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1
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568
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Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
6 weeks ago by yura.grabovska ▴ 690
1
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218
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Comment: Comment: Good Dotplots for homogenous data (Seurat)
6 weeks ago by yura.grabovska ▴ 690
1
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1
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568
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Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
7 weeks ago by yura.grabovska ▴ 690
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1
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294
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Comment: Comment: Cell cluster that mainly consists of doublet.
7 weeks ago by yura.grabovska ▴ 690
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234
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Comment: Comment: CCLE Cell lines annotations
7 weeks ago by yura.grabovska ▴ 690
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424
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Comment: Comment: 0-based or 1-based file format using R pipeline?
7 weeks ago by yura.grabovska ▴ 690
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1
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424
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Comment: Comment: 0-based or 1-based file format using R pipeline?
7 weeks ago by yura.grabovska ▴ 690
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288
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Answer: Answer: Appropriate minimum gene set size for gene set enrichment analysis
7 weeks ago by yura.grabovska ▴ 690
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256
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Seurat Xenium QC
R Xenium spatial Seurat
updated 7 weeks ago by 5.9k • written 7 weeks ago by ▴ 690
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356
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Comment: Comment: cnvpytor run problem
7 weeks ago by yura.grabovska ▴ 690
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1
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356
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Answer: Answer: cnvpytor run problem
7 weeks ago by yura.grabovska ▴ 690
1
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1
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546
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Answer: Answer: PCA for count data
7 weeks ago by yura.grabovska ▴ 690
1
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374
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Comment: Comment: Removing features from RNA assay in seurat
8 weeks ago by yura.grabovska ▴ 690
1
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1
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374
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Comment: Comment: Removing features from RNA assay in seurat
8 weeks ago by yura.grabovska ▴ 690
1
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1.9k
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Comment: Comment: Center multiple pheatmap
8 weeks ago by yura.grabovska ▴ 690
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1
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1.9k
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Comment: Comment: Center multiple pheatmap
8 weeks ago by yura.grabovska ▴ 690
2
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402
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Comment: Comment: creat histogram in R
8 weeks ago by yura.grabovska ▴ 690
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249
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Comment: Comment: Course: Single-cell RNA-seq analysis with R/Bioconductor
8 weeks ago by yura.grabovska ▴ 690
1
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1
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391
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Comment: Comment: GSVA with a genelist on a "per-cluster" basis
8 weeks ago by yura.grabovska ▴ 690
1
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1
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391
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Answer: Answer: GSVA with a genelist on a "per-cluster" basis
8 weeks ago by yura.grabovska ▴ 690
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0
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428
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Comment: Comment: Error function vst in DESeq2
8 weeks ago by yura.grabovska ▴ 690
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