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Answer: Answer: How to do functional analysis on differentially expressed gene list from RNA-seq
13 months ago by MaxF ▴ 120
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1
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6.5k
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Comment: Comment: Error in GSEA function of clusterProfiler on R
14 months ago by MaxF ▴ 120
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0
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707
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Adjust for confounding variables with ANCOM-BC
ANCOMBC sequencing microbiome
17 months ago by MaxF ▴ 120
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3.6k
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Comment: Comment: Error: package or namespace load failed for ReactomePA
17 months ago by MaxF ▴ 120
2
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2
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844
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DNA vs RNA seq for microbiome
microbiome rnaseq sequencing
updated 22 months ago by ★ 2.1k • written 22 months ago by ▴ 120
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1
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1.4k
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Comment: C: Conditional clustering arguments in R (complexheatmap)
2.4 years ago by MaxF ▴ 120
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1.4k
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Comment: C: Conditional clustering arguments in R (complexheatmap)
2.4 years ago by MaxF ▴ 120
4
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5
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1.4k
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Conditional clustering arguments in R (complexheatmap)
R heatmap
updated 2.4 years ago by 70k • written 2.4 years ago by ▴ 120
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1
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41k
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Comment: C: extract dendrogram cluster from pheatmap
2.6 years ago by MaxF ▴ 120
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1
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1.7k
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Comment: C: DESeq2 design with three treatments and the genes common to all
2.7 years ago by MaxF ▴ 120
6
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3
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1.7k
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DESeq2 design with three treatments and the genes common to all
RNA-Seq R desq2
updated 2.7 years ago by 84k • written 2.7 years ago by ▴ 120
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1.7k
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Comment: C: How to make bed file of TSS (approximately 2kb, 1 kb upstream and 1kb downstream
2.7 years ago by MaxF ▴ 120
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0
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1.2k
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Comment: C: how to find gene ontology for genes using RNA-seq data
2.7 years ago by MaxF ▴ 120
0
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1
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1.2k
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Comment: C: how to find gene ontology for genes using RNA-seq data
2.7 years ago by MaxF ▴ 120
0
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1
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1.2k
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Comment: C: how to find gene ontology for genes using RNA-seq data
2.7 years ago by MaxF ▴ 120
0
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1
reply
1.7k
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Comment: C: How to make bed file of TSS (approximately 2kb, 1 kb upstream and 1kb downstream
2.7 years ago by MaxF ▴ 120
0
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1
reply
1.2k
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Comment: C: how to find gene ontology for genes using RNA-seq data
2.7 years ago by MaxF ▴ 120
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0
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7.7k
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Comment: C: padj in DEseq2
2.7 years ago by MaxF ▴ 120
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1
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2.7k
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Comment: C: Use padj instead of p-value to ploting DE genes using EnhancedVolcano
2.7 years ago by MaxF ▴ 120
1
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1
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1.7k
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Comment: C: How to make bed file of TSS (approximately 2kb, 1 kb upstream and 1kb downstream
2.7 years ago by MaxF ▴ 120
1
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1
reply
1.2k
views
Answer: A: how to find gene ontology for genes using RNA-seq data
2.7 years ago by MaxF ▴ 120
2
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0
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2.9k
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Comment: C: GENE ONTOLOGY VS PATHWAY ANALYSIS...
2.7 years ago by MaxF ▴ 120
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1
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2.0k
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Comment: C: Bioinformatics computer upgrade help
2.7 years ago by MaxF ▴ 120
3
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0
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1.9k
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Answer: A: What result from DESeq2 should be used as an input for volcano plot?
2.7 years ago by MaxF ▴ 120
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0
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9.3k
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Comment: C: Making a heatmap: sample vs. fold change
2.7 years ago by MaxF ▴ 120
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1
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4.1k
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Comment: C: Genes associated with GO term
2.8 years ago by MaxF ▴ 120
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2.2k
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Comment: C: finding a list of genes involved in a pathway?
2.8 years ago by MaxF ▴ 120
0
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0
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12k
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Comment: C: linking ensembl gene ID to GO term?
2.8 years ago by MaxF ▴ 120
0
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0
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70k
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Comment: C: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
4.0 years ago by MaxF ▴ 120
1
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0
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3.5k
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Comment: C: Salmon Counts differ in Alignment and Quasi-Mapping mode
4.1 years ago by MaxF ▴ 120
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0
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2.2k
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Comment: C: Salmon and reads order in fastq in quasi-mapping-based mode
4.1 years ago by MaxF ▴ 120
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2
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3.5k
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Comment: C: Salmon Counts differ in Alignment and Quasi-Mapping mode
4.1 years ago by MaxF ▴ 120
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6
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3.5k
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Salmon Counts differ in Alignment and Quasi-Mapping mode
salmon RNA-Seq alignment
4.1 years ago by MaxF ▴ 120
0
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0
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2.2k
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Comment: C: Salmon and reads order in fastq in quasi-mapping-based mode
4.1 years ago by MaxF ▴ 120
0
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2
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2.2k
views
Comment: C: Salmon and reads order in fastq in quasi-mapping-based mode
4.1 years ago by MaxF ▴ 120
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