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Comment: Comment: Freyja tool help
22 months ago by bk11 ★ 3.1k
1
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0
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803
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Answer: Answer: filter 1000 genome vcf file to keep common snps
22 months ago by bk11 ★ 3.1k
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0
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2.3k
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
22 months ago by bk11 ★ 3.1k
1
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0
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701
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Comment: Comment: Extract Domain Architectures from Pfam / Interpro
22 months ago by bk11 ★ 3.1k
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0
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670
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Comment: Comment: Compute ld and genomic distance using clump function in plink
22 months ago by bk11 ★ 3.1k
1
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1
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4.0k
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
22 months ago by bk11 ★ 3.1k
1
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1
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4.0k
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Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
22 months ago by bk11 ★ 3.1k
0
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0
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994
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Comment: Comment: sample data for plant RNA seq analysis
22 months ago by bk11 ★ 3.1k
1
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0
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756
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Comment: Comment: RNA-Seq and ATAC-Seq quality check
22 months ago by bk11 ★ 3.1k
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0
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1.7k
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Comment: Comment: There are several lines in Manhattan plot.
22 months ago by bk11 ★ 3.1k
2
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0
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842
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Answer: Answer: OSCA -open .h5 file
22 months ago by bk11 ★ 3.1k
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0
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858
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Comment: Comment: Trimming reads before running Juicer
22 months ago by bk11 ★ 3.1k
1
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0
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794
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Comment: Comment: Metabolomics Data Analysis
22 months ago by bk11 ★ 3.1k
0
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1
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1.7k
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Answer: Answer: There are several lines in Manhattan plot.
22 months ago by bk11 ★ 3.1k
0
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1
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1.2k
views
Answer: Answer: tool to find enhancer associated to gene list
22 months ago by bk11 ★ 3.1k
1
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1
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1.5k
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Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
23 months ago by bk11 ★ 3.1k
0
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1
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827
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Comment: Comment: Seeking Individual-Level Genotype Data for Linkage Disequilibrium Analysis Beyon
23 months ago by bk11 ★ 3.1k
1
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0
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2.4k
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Answer: Answer: Convert bed file from hg19 to GRCH38
23 months ago by bk11 ★ 3.1k
0
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0
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1.2k
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Comment: Comment: select unique samples in R
23 months ago by bk11 ★ 3.1k
0
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13
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3.6k
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Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cell Ranger.
fixed-RNA-profiling chromium cellranger scFFPE
updated 23 months ago by ▴ 70 • written 2.0 years ago by ★ 3.1k
0
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1
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7.8k
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Comment: Comment: Cellcyclescoring did not work in Seurat V5
23 months ago by bk11 ★ 3.1k
2
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2
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1.7k
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Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
24 months ago by bk11 ★ 3.1k
1
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1
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1.3k
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Comment: Comment: Quality control on imputed genotypes for GWAS / application of PGS
24 months ago by bk11 ★ 3.1k
2
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0
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8.5k
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Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
24 months ago by bk11 ★ 3.1k
0
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1
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2.3k
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Comment: Comment: scRNA-seq quality control
24 months ago by bk11 ★ 3.1k
1
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1
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2.0k
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Comment: Comment: duplicates issues when trying to convert long to wide in R
24 months ago by bk11 ★ 3.1k
0
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0
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896
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Answer: Answer: Perform PCA
24 months ago by bk11 ★ 3.1k
1
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1
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2.0k
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Answer: Answer: duplicates issues when trying to convert long to wide in R
24 months ago by bk11 ★ 3.1k
1
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1
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1.0k
views
Comment: Comment: A question about the missing or not observed alleles in PLINK datasets
2.0 years ago by bk11 ★ 3.1k
0
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0
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764
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Answer: Answer: Should I apply doublet detection for each pool seperately?
2.0 years ago by bk11 ★ 3.1k
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0
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1.8k
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Comment: Comment: convert matrix files from 10X (single cell) to h5 file
2.0 years ago by bk11 ★ 3.1k
1
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0
replies
956
views
Answer: Answer: LD D-prime (D') calculation
2.0 years ago by bk11 ★ 3.1k
0
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0
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1.2k
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Answer: Answer: Plink Error
2.0 years ago by bk11 ★ 3.1k
0
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0
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1.6k
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Answer: Answer: XLOC gene id
2.0 years ago by bk11 ★ 3.1k
0
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0
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1.7k
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Answer: Answer: PLINK Error: No valid entries in --score file
2.0 years ago by bk11 ★ 3.1k
1
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0
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2.0k
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Comment: Comment: Read multiple vcf files into R
2.0 years ago by bk11 ★ 3.1k
1
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0
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1.6k
views
Answer: Answer: how to merge multiple files based on column header
updated 2.0 years ago by 45k • written 2.0 years ago by ★ 3.1k
0
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1
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1.1k
views
Comment: Comment: Normalized data values very different from unnormalized counts in Seurat
2.0 years ago by bk11 ★ 3.1k
1
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1
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1.9k
views
Comment: Comment: A question about genotyping rate
2.0 years ago by bk11 ★ 3.1k
0
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1
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1.9k
views
Comment: Comment: A question about genotyping rate
2.0 years ago by bk11 ★ 3.1k
0
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1
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1.9k
views
Comment: Comment: A question about genotyping rate
2.0 years ago by bk11 ★ 3.1k
3
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1
reply
2.4k
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
2.0 years ago by bk11 ★ 3.1k
0
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1
reply
2.4k
views
Answer: Answer: Doheatmap in seurat
2.0 years ago by bk11 ★ 3.1k
3
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0
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728
views
Answer: Answer: How to retrieve the number of reads mapped for each chromosome in the BAM file o
2.0 years ago by bk11 ★ 3.1k
0
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1
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1.7k
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Comment: Comment: Bowtie2/Fastq-dump problem
2.0 years ago by bk11 ★ 3.1k
0
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0
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1.4k
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Comment: Comment: will using samtools merge to multiple bam files also remove the redundancy ?
2.0 years ago by bk11 ★ 3.1k
1
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1
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1.9k
views
Answer: Answer: FPKM values for DE analysis - Why?
2.0 years ago by bk11 ★ 3.1k
0
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0
replies
1.5k
views
Comment: Comment: error in Fastq
2.0 years ago by bk11 ★ 3.1k
0
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1
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2.8k
views
Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
2.0 years ago by bk11 ★ 3.1k
0
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0
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1.2k
views
Comment: Comment: How do I add sample annotations to this data?
2.0 years ago by bk11 ★ 3.1k
474 results • Page 4 of 10
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