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3
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6
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2.4k
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Flatten a GTF
flatten GTF annotation
updated 3.6 years ago by 9.3k • written 3.6 years ago by 89k
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0
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3.0k
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Comment: Comment: Statistical test on Single-cell clusters(cell types)
3.6 years ago by Kevin Blighe 89k
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1
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1.6k
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Comment: Comment: EdgeR, Please help me review my R script in glm approach
3.6 years ago by Kevin Blighe 89k
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0
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41k
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Comment: Comment: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
3.6 years ago by Kevin Blighe 89k
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1
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1.4k
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Comment: Comment: Gene ontology in the Microarray data
3.6 years ago by Kevin Blighe 89k
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0
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785
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Comment: Comment: apt-format-result, where is the --annotation-file?
3.6 years ago by Kevin Blighe 89k
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0
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6.9k
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Comment: Comment: How to convert and annotate apt-probeset-genotype into PLINK format
3.6 years ago by Kevin Blighe 89k
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1
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1.4k
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Comment: Comment: Gene ontology in the Microarray data
3.6 years ago by Kevin Blighe 89k
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1
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1.4k
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Comment: Comment: Gene ontology in the Microarray data
3.6 years ago by Kevin Blighe 89k
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1
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1.4k
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Comment: Comment: Microarray
3.6 years ago by Kevin Blighe 89k
1
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1
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1.4k
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Answer: Answer: Microarray
3.6 years ago by Kevin Blighe 89k
2
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0
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1.3k
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Answer: Answer: What is recurrent somatic copy-number alterations?
3.6 years ago by Kevin Blighe 89k
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0
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758
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Answer: Answer: Vcf stat about consequences
3.6 years ago by Kevin Blighe 89k
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0
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1.9k
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Comment: Comment: cufflinks FPKM values
3.6 years ago by Kevin Blighe 89k
1
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0
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1.1k
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Comment: Comment: Differential expression based on normalized data
3.6 years ago by Kevin Blighe 89k
0
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1
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1.9k
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Answer: Answer: cufflinks FPKM values
3.6 years ago by Kevin Blighe 89k
2
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1
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6.6k
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Answer: Answer: DP meaning in VCF files
3.6 years ago by Kevin Blighe 89k
1
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1
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1.1k
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Answer: Answer: Differential expression based on normalized data
3.6 years ago by Kevin Blighe 89k
0
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1
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19k
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Comment: Comment: Technical replicates in RNAseq
3.7 years ago by Kevin Blighe 89k
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0
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4.6k
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Comment: Comment: Convert 4 million SNPs' positions to rsID
3.7 years ago by Kevin Blighe 89k
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0
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1.7k
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Comment: Comment: How to do functional analysis on differentially expressed gene list from RNA-seq
3.8 years ago by Kevin Blighe 89k
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0
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891
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Comment: Comment: ensembl
3.8 years ago by Kevin Blighe 89k
4
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1
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1.7k
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Answer: Answer: mutation not in RNAseq read
3.8 years ago by Kevin Blighe 89k
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0
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31k
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Comment: Comment: Download full list of SNPs and their coordinates in hg38
3.8 years ago by Kevin Blighe 89k
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0
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1.3k
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Comment: Comment: Is it wrong to use only a random subset of a dataset?
3.8 years ago by Kevin Blighe 89k
1
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1
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1.3k
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Comment: Comment: Is it wrong to use only a random subset of a dataset?
3.8 years ago by Kevin Blighe 89k
1
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1
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12k
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Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
3.9 years ago by Kevin Blighe 89k
1
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1
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12k
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Answer: Answer: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
3.9 years ago by Kevin Blighe 89k
1
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0
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2.1k
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Comment: Comment: Bioconductor, R, RipSeeker and RIP-seq problem
3.9 years ago by Kevin Blighe 89k
28
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17
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7.0k
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7 follow
Tool: PCAtools: everything Principal Components Analysis
eigenvector pca bioconductor R
updated 2.4 years ago by 45k • written 6.8 years ago by 89k
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0
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1.3k
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Comment: Comment: Ensembl REST API Endpoints
3.9 years ago by Kevin Blighe 89k
0
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0
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4.1k
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Comment: Comment: Deseq2 normalization for WGCNA
3.9 years ago by Kevin Blighe 89k
1
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1
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3.3k
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Comment: Comment: Error while converting Gene ID to Ensembl IDs
3.9 years ago by Kevin Blighe 89k
2
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0
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2.5k
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Comment: Comment: Spike proteins sequences of all variants of Covid
3.9 years ago by Kevin Blighe 89k
1
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0
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5.1k
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Comment: Comment: Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the
3.9 years ago by Kevin Blighe 89k
0
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1
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1.9k
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Comment: Comment: principal compoent analysis on pool-seq SNP data
3.9 years ago by Kevin Blighe 89k
0
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1
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1.2k
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Comment: Comment: Fellowship
4.0 years ago by Kevin Blighe 89k
0
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1
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8.7k
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Comment: Comment: bcftools multiallelic split not working
4.0 years ago by Kevin Blighe 89k
0
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0
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4.1k
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Comment: Comment: DEG analysis by limma
4.0 years ago by Kevin Blighe 89k
0
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0
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1.0k
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Answer: Answer: Tumor Mutation Burden
4.0 years ago by Kevin Blighe 89k
6
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1
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5.0k
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Answer: Answer: 【bioconda】The channel is not accessible or is invalid.
4.0 years ago by Kevin Blighe 89k
1
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0
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1.8k
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Comment: Comment: How to define low, medium or high expression of a microRNA?
4.0 years ago by Kevin Blighe 89k
0
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1
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1.4k
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Comment: Comment: Learning how to create a pipeline in python
4.0 years ago by Kevin Blighe 89k
1
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0
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2.0k
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Answer: Answer: Count number of basepairs and exclude other characters
4.0 years ago by Kevin Blighe 89k
1
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1
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1.2k
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Comment: Comment: Convert plink files from
4.0 years ago by Kevin Blighe 89k
0
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1
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1.8k
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Comment: Comment: Is it feasible to combine TCGA and GEO data by using ComBat?
4.0 years ago by Kevin Blighe 89k
1
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1
reply
8.1k
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Comment: Comment: The purpose of scaling to a negative binomial distribution in single cell RNA-se
4.0 years ago by Kevin Blighe 89k
1
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1
reply
4.3k
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Comment: Comment: Noob question: replacing ensembl ID with the gene symbol?
4.0 years ago by Kevin Blighe 89k
2
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1
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1.4k
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Answer: Answer: Should limma DE results from FPKM data make at least certain sense?
4.0 years ago by Kevin Blighe 89k
4
votes
2
replies
3.2k
views
Answer: Answer: How to generate a 2D PCA plot from bulk RNA-seq data (log2 CPM) using the PCAtoo
4.0 years ago by Kevin Blighe 89k
9,958 results • Page 9 of 200
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