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1.5k
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Comment:
Comment: Removing adapter/primer sequence from reads while keeping flanking regions
10 months ago by
swbarnes2
14k
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1.0k
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Comment:
Comment: Seeking Help with Unexpected MA Plot Output
10 months ago by
swbarnes2
14k
1
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819
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Comment:
Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
10 months ago by
swbarnes2
14k
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1.1k
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Comment:
Comment: RNA_seq
11 months ago by
swbarnes2
14k
2
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592
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Comment:
Comment: Getting less DE genes when incorporating all samples
12 months ago by
swbarnes2
14k
1
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739
views
Comment:
Comment: Count table statistical analysis
12 months ago by
swbarnes2
14k
1
vote
1
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1.1k
views
Comment:
Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
12 months ago by
swbarnes2
14k
1
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0
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1.1k
views
Comment:
Comment: Three fastq files
12 months ago by
swbarnes2
14k
0
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0
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791
views
Comment:
Comment: Differential gene expression design using Deseq2
12 months ago by
swbarnes2
14k
2
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1
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1.9k
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Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
12 months ago by
swbarnes2
14k
1
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1
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1.9k
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Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
12 months ago by
swbarnes2
14k
0
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0
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783
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Comment:
Comment: Running Deseq2 with all samples vs samples for each comparison separately
13 months ago by
swbarnes2
14k
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1.1k
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Comment:
Comment: No tumour cells in clustering of tumor sample?!
13 months ago by
swbarnes2
14k
0
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0
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1.4k
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Comment:
Comment: DESeq2 heatmap with low baseMean values
13 months ago by
swbarnes2
14k
0
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1
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1.4k
views
Comment:
Comment: DESeq2 heatmap with low baseMean values
13 months ago by
swbarnes2
14k
0
votes
0
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958
views
Comment:
Comment: bcl2fastq problems with the yield
14 months ago by
swbarnes2
14k
1
vote
1
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1.1k
views
Comment:
Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
14 months ago by
swbarnes2
14k
0
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0
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1.4k
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Comment:
Comment: STAR ALIGNMENT
15 months ago by
swbarnes2
14k
0
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1
reply
1.4k
views
Comment:
Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
15 months ago by
swbarnes2
14k
1
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0
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1.7k
views
Comment:
Comment: deal with PCA and my samples
15 months ago by
swbarnes2
14k
0
votes
1
reply
2.5k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
16 months ago by
swbarnes2
14k
1
vote
1
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2.5k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
16 months ago by
swbarnes2
14k
0
votes
1
reply
907
views
Comment:
Comment: I cannot obtain summary alignment with Bowtie2
16 months ago by
swbarnes2
14k
0
votes
0
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1.2k
views
Comment:
Comment: DESeq2: DESeqDataSetFromMatrix Error
16 months ago by
swbarnes2
14k
0
votes
0
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718
views
Comment:
Comment: Use SAM files in ref_map.pl
16 months ago by
swbarnes2
14k
0
votes
0
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979
views
Comment:
Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
16 months ago by
swbarnes2
14k
1
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1
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1.5k
views
Comment:
Comment: Adding a control sample to bulk RNA-seq
17 months ago by
swbarnes2
14k
0
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0
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1.0k
views
Comment:
Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
17 months ago by
swbarnes2
14k
1
vote
0
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873
views
Comment:
Comment: Batch effect consideration (re-seq the same sample twice)
17 months ago by
swbarnes2
14k
0
votes
1
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818
views
Comment:
Comment: htseq-count reports count values for deleted genes
17 months ago by
swbarnes2
14k
0
votes
0
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1.1k
views
Comment:
Comment: How to Add Mutations to the sequence
17 months ago by
swbarnes2
14k
0
votes
0
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2.0k
views
Comment:
Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
17 months ago by
swbarnes2
14k
2
votes
0
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2.0k
views
Comment:
Comment: STAR mapping - regarding output files content
18 months ago by
swbarnes2
14k
0
votes
0
replies
1.5k
views
Comment:
Comment: RSEM uses different gene lengths for each sample.
18 months ago by
swbarnes2
14k
0
votes
0
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963
views
Comment:
Comment: Can I extract a complete sequence of gene from mapped reads bam file
18 months ago by
swbarnes2
14k
1
vote
0
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1.8k
views
Comment:
Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
19 months ago by
swbarnes2
14k
1
vote
0
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1.6k
views
Comment:
Comment: Transcript quantification
20 months ago by
swbarnes2
14k
0
votes
0
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3.3k
views
Comment:
Comment: Getting sequences from fastq file using Grep command
20 months ago by
swbarnes2
14k
0
votes
0
replies
1.8k
views
Comment:
Comment: A question about the raw RNA-seq processing workflow
20 months ago by
swbarnes2
14k
0
votes
1
reply
1.8k
views
Comment:
Comment: A question about the raw RNA-seq processing workflow
20 months ago by
swbarnes2
14k
0
votes
0
replies
2.7k
views
Comment:
Comment: Counting intronic reads in bulk RNA-seq
20 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: Ambient RNA expression correction
20 months ago by
swbarnes2
14k
0
votes
0
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1.4k
views
Comment:
Comment: RNAseq Data and Pipeline
20 months ago by
swbarnes2
14k
0
votes
0
replies
1.4k
views
Comment:
Comment: Is there anyway to cancel CPM normalization?
20 months ago by
swbarnes2
14k
0
votes
0
replies
2.1k
views
Comment:
Comment: Single cell chemistry
20 months ago by
swbarnes2
14k
0
votes
0
replies
2.1k
views
Comment:
Comment: Single cell chemistry
20 months ago by
swbarnes2
14k
0
votes
1
reply
2.1k
views
Comment:
Comment: Single cell chemistry
20 months ago by
swbarnes2
14k
0
votes
1
reply
2.1k
views
Comment:
Comment: Single cell chemistry
20 months ago by
swbarnes2
14k
1
vote
0
replies
861
views
Comment:
Comment: Using RNA-seq to detect pathogen sequences in host tissue
21 months ago by
swbarnes2
14k
1
vote
0
replies
1.9k
views
Comment:
Comment: On "wings" in volcano plots...
21 months ago by
swbarnes2
14k
1,060 results • Page
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