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15
votes
11
replies
16k
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6 follow
What's the difference between enrichKEGG and gseKEGG
clusterprofiler KEGG
updated 3.4 years ago by ▴ 70 • written 5.9 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Comment: Comment: BED Heatmap
4.2 years ago by ben.kunfang ▴ 30
0
votes
0
replies
2.3k
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Comment: C: Convert fastqc.gz file to BED file format
5.0 years ago by ben.kunfang ▴ 30
0
votes
0
replies
906
views
How to count the paired end reads number in given regions
paired-end bam Hi-C HiC-Pro
5.0 years ago by ben.kunfang ▴ 30
0
votes
0
replies
1.1k
views
Comment: C: How to deal with Hi-C replicates from different patients' tissue sample?
5.0 years ago by ben.kunfang ▴ 30
2
votes
2
replies
1.1k
views
How to deal with Hi-C replicates from different patients' tissue sample?
Hi-C patient replicates
updated 5.0 years ago by ★ 8.3k • written 5.0 years ago by ▴ 30
0
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1
reply
3.2k
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Answer: A: TPM for correlation between genes
5.2 years ago by ben.kunfang ▴ 30
0
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1
reply
2.0k
views
Comment: C: Do I have to use index with trans information for RNA-seq alignment by Hisat2?
5.5 years ago by ben.kunfang ▴ 30
2
votes
3
replies
2.0k
views
Do I have to use index with trans information for RNA-seq alignment by Hisat2?
Hisat2 RNA-Seq
updated 5.5 years ago by 103k • written 5.5 years ago by ▴ 30
0
votes
0
replies
4.8k
views
Answer: A: Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq dat
5.7 years ago by ben.kunfang ▴ 30
0
votes
0
replies
740
views
How to get the fine-mapped SNPs associated with risk loci
GWAS SNPs breast cancer fine-mapped
5.7 years ago by ben.kunfang ▴ 30
0
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0
replies
2.3k
views
Answer: A: macs2 call peak
5.8 years ago by ben.kunfang ▴ 30
0
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0
replies
16k
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Comment: C: What's the difference between enrichKEGG and gseKEGG
5.8 years ago by ben.kunfang ▴ 30
0
votes
0
replies
16k
views
Comment: C: What's the difference between enrichKEGG and gseKEGG
5.8 years ago by ben.kunfang ▴ 30
1
vote
0
replies
16k
views
Comment: C: What's the difference between enrichKEGG and gseKEGG
5.8 years ago by ben.kunfang ▴ 30
0
votes
2
replies
16k
views
Comment: C: What's the difference between enrichKEGG and gseKEGG
5.8 years ago by ben.kunfang ▴ 30
0
votes
0
replies
2.2k
views
Comment: C: Draw coverage plot from bed file
6.1 years ago by ben.kunfang ▴ 30
0
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1
reply
2.2k
views
Comment: C: Draw coverage plot from bed file
6.1 years ago by ben.kunfang ▴ 30
0
votes
1
reply
2.2k
views
Comment: C: Draw coverage plot from bed file
6.1 years ago by ben.kunfang ▴ 30
2
votes
6
replies
2.2k
views
Draw coverage plot from bed file
bed deeptools coverage
updated 2.5 years ago by 45k • written 6.1 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Comment: C: Error in peak calling using SPP package
6.1 years ago by ben.kunfang ▴ 30
1
vote
1
reply
5.4k
views
Comment: C: New ultraperformant version of SICER/epic: epic2
6.3 years ago by ben.kunfang ▴ 30
0
votes
0
replies
2.6k
views
Different parameters for macs2 to call narrow marks and broad marks?
ChIP-Seq macs2 histone modification peak
6.3 years ago by ben.kunfang ▴ 30
0
votes
0
replies
3.9k
views
Comment: C: Ideas to split peaks into subpeaks - beyond PeakSplitter
6.3 years ago by ben.kunfang ▴ 30
0
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0
replies
2.5k
views
Comment: C: Why the estimated fragment length result is different between SPP and macs2 pred
6.3 years ago by ben.kunfang ▴ 30
0
votes
0
replies
1.2k
views
how to deal with H3K4me3 and H3K4me1 overlap peaks?
ChIP-Seq macs2 peak histone modification
6.4 years ago by ben.kunfang ▴ 30
0
votes
1
reply
2.5k
views
Comment: C: Why the estimated fragment length result is different between SPP and macs2 pred
6.4 years ago by ben.kunfang ▴ 30
1
vote
4
replies
2.5k
views
Why the estimated fragment length result is different between SPP and macs2 predictd?
SPP macs2 estimate fragment length
6.4 years ago by ben.kunfang ▴ 30
0
votes
0
replies
2.1k
views
How to get the pooled-replicate narrowPeak file for IDR peak-list
IDR pooled-replicate
6.4 years ago by ben.kunfang ▴ 30
0
votes
0
replies
7.1k
views
Answer: A: understanding bamtobed output
7.7 years ago by ben.kunfang ▴ 30
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