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1
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0
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2.4k
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Answer: A: How find correlations between ChIP-seq tracks?
7.3 years ago by Ian 6.1k
24
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9
replies
19k
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Extracting Paired-End Reads Sitting In Different Chromosomes
samtools paired
updated 7.3 years ago by ▴ 460 • written 13.7 years ago by 6.1k
5
votes
4
replies
3.1k
views
Method for creating an EMBL formatted annotated sequence?
sequence ENA EMBL
7.7 years ago by Ian 6.1k
2
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0
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3.1k
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Answer: A: Method for creating an EMBL formatted annotated sequence?
7.7 years ago by Ian 6.1k
0
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2
replies
4.0k
views
Extracting Ucsc Canonical Gene Information
ucsc
updated 7.7 years ago by 20 • written 14.2 years ago by 6.1k
0
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0
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2.5k
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Answer: A: What shall I do with this RNA-seq data that have no replicates?
7.8 years ago by Ian 6.1k
0
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0
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4.7k
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Comment: C: Biological significance of Fold_enrichment in macs2
7.9 years ago by Ian 6.1k
2
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0
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8.6k
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Answer: A: How to repair *all* problems identified by FastQC?
7.9 years ago by Ian 6.1k
2
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1
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4.7k
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Answer: A: Biological significance of Fold_enrichment in macs2
7.9 years ago by Ian 6.1k
0
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0
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1.8k
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Answer: A: Features for detection of gene.
7.9 years ago by Ian 6.1k
1
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0
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4.8k
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Comment: C: How can I locate motif in DNA sequence.
8.0 years ago by Ian 6.1k
1
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0
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12k
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Comment: C: BagFoot TF foot printing
8.0 years ago by Ian 6.1k
9
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1
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22k
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Answer: A: Normalized Bigwig Files
8.3 years ago by Ian 6.1k
1
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1
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10k
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Comment: C: How to choose Trimmomatic's parameter 'MINLEN '?
8.4 years ago by Ian 6.1k
0
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0
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3.7k
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Answer: A: Differential chip-seq peak calling using macs2
8.4 years ago by Ian 6.1k
4
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1
reply
10k
views
Answer: A: How to choose Trimmomatic's parameter 'MINLEN '?
8.4 years ago by Ian 6.1k
2
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0
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3.7k
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Answer: A: ChIP-seq Input replicate correlation
8.5 years ago by Ian 6.1k
1
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0
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5.8k
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Comment: C: Peak calling for broad histone-modification regions
8.5 years ago by Ian 6.1k
2
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1
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8.1k
views
Answer: A: Filter MACS peaks by enrichment/FDR?
8.5 years ago by Ian 6.1k
0
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1
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5.1k
views
Comment: C: prepare pair-ended reads for peak calling
8.6 years ago by Ian 6.1k
0
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1
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5.1k
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Comment: C: prepare pair-ended reads for peak calling
8.6 years ago by Ian 6.1k
0
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1
reply
32k
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Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
8.7 years ago by Ian 6.1k
0
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1
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3.5k
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Comment: C: How to extend variable length intervals to the same final length?
8.7 years ago by Ian 6.1k
0
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0
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3.5k
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Comment: C: How to extend variable length intervals to the same final length?
8.7 years ago by Ian 6.1k
5
votes
6
replies
3.5k
views
How to extend variable length intervals to the same final length?
bedtools slop intervals footprint
updated 8.7 years ago by 36k • written 8.7 years ago by 6.1k
1
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1
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2.6k
views
Answer: A: ChIP on chip array cover genome or promoter regions?
8.8 years ago by Ian 6.1k
3
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1
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8.6k
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Answer: A: Paired end and single end with MACS2
8.8 years ago by Ian 6.1k
0
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1
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2.6k
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Comment: C: ChIP on chip array cover genome or promoter regions?
8.8 years ago by Ian 6.1k
16
votes
1
reply
270k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
8.8 years ago by Ian 6.1k
0
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0
replies
1.4k
views
Answer: A: Chip Seq controls
8.9 years ago by Ian 6.1k
1
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1
reply
2.9k
views
Answer: A: How analyse chip-exo paired read data and get BigWig or Peaks called?
9.0 years ago by Ian 6.1k
0
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1
reply
6.2k
views
Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
9.0 years ago by Ian 6.1k
0
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2
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5.7k
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Comment: C: call differential peaks H3K27ac
9.0 years ago by Ian 6.1k
2
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1
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5.7k
views
Answer: A: call differential peaks H3K27ac
9.0 years ago by Ian 6.1k
1
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0
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6.0k
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Answer: A: Tag size in MACS and MACS2
9.1 years ago by Ian 6.1k
1
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0
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5.6k
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Comment: C: Trim adapter sequence for single-end
9.2 years ago by Ian 6.1k
6
votes
3
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9.6k
views
Tool: Masc - A Tool For Calculating Mean Fragment Size For Chip-Seq Peak Calling Analysis
chip-seq
updated 2.4 years ago by 45k • written 12.7 years ago by 6.1k
0
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0
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1.8k
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Answer: A: TFBS finding in whole genome
9.3 years ago by Ian 6.1k
5
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0
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37k
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Answer: A: Is Paired End analysis possible with FASTQC?
9.5 years ago by Ian 6.1k
0
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1
reply
3.6k
views
Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
9.5 years ago by Ian 6.1k
0
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0
replies
3.6k
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Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
9.5 years ago by Ian 6.1k
3
votes
5
replies
3.6k
views
Problem viewing a bigWig file on UCSC browser - any debugging solutions?
ucsc bigwig
9.5 years ago by Ian 6.1k
1
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0
replies
7.9k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
9.6 years ago by Ian 6.1k
0
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0
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6.4k
views
Comment: C: Do I need to remove adapter if FastQC showed no adapter content.
9.6 years ago by Ian 6.1k
1
vote
1
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59k
views
Answer: A: Visualization of ChIP-seq data using Heatmaps
9.7 years ago by Ian 6.1k
4
votes
3
replies
73k
views
Answer: A: How To Convert Gencode Gtf Into Bed Format ?
updated 9.7 years ago by 36k • written 13.0 years ago by 6.1k
0
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0
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4.5k
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Comment: C: 'effective genome size' , how precisse does it have to be?
9.7 years ago by Ian 6.1k
0
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0
replies
2.5k
views
Answer: Answer: Does sequencing depth affect MACS2 q-values?
updated 3.3 years ago by 45k • written 9.7 years ago by 6.1k
1
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1
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7.9k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
9.8 years ago by Ian 6.1k
0
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0
replies
9.6k
views
Comment: C: Doubts related to MACS tool
9.8 years ago by Ian 6.1k
468 results • Page 3 of 10
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