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answers
comments
1
vote
0
replies
2.4k
views
Answer:
A: How find correlations between ChIP-seq tracks?
7.3 years ago by
Ian
6.1k
24
votes
9
replies
19k
views
Extracting Paired-End Reads Sitting In Different Chromosomes
samtools
paired
updated 7.3 years ago by
Stephane Plaisance
▴ 460 • written 13.7 years ago by
Ian
6.1k
5
votes
4
replies
3.1k
views
Method for creating an EMBL formatted annotated sequence?
sequence
ENA
EMBL
7.7 years ago by
Ian
6.1k
2
votes
0
replies
3.1k
views
Answer:
A: Method for creating an EMBL formatted annotated sequence?
7.7 years ago by
Ian
6.1k
0
votes
2
replies
4.0k
views
Extracting Ucsc Canonical Gene Information
ucsc
updated 7.7 years ago by
Biostar
20 • written 14.2 years ago by
Ian
6.1k
0
votes
0
replies
2.5k
views
Answer:
A: What shall I do with this RNA-seq data that have no replicates?
7.8 years ago by
Ian
6.1k
0
votes
0
replies
4.7k
views
Comment:
C: Biological significance of Fold_enrichment in macs2
7.9 years ago by
Ian
6.1k
2
votes
0
replies
8.6k
views
Answer:
A: How to repair *all* problems identified by FastQC?
7.9 years ago by
Ian
6.1k
2
votes
1
reply
4.7k
views
Answer:
A: Biological significance of Fold_enrichment in macs2
7.9 years ago by
Ian
6.1k
0
votes
0
replies
1.8k
views
Answer:
A: Features for detection of gene.
7.9 years ago by
Ian
6.1k
1
vote
0
replies
4.8k
views
Comment:
C: How can I locate motif in DNA sequence.
8.0 years ago by
Ian
6.1k
1
vote
0
replies
12k
views
Comment:
C: BagFoot TF foot printing
8.0 years ago by
Ian
6.1k
9
votes
1
reply
22k
views
Answer:
A: Normalized Bigwig Files
8.3 years ago by
Ian
6.1k
1
vote
1
reply
10k
views
Comment:
C: How to choose Trimmomatic's parameter 'MINLEN '?
8.4 years ago by
Ian
6.1k
0
votes
0
replies
3.7k
views
Answer:
A: Differential chip-seq peak calling using macs2
8.4 years ago by
Ian
6.1k
4
votes
1
reply
10k
views
Answer:
A: How to choose Trimmomatic's parameter 'MINLEN '?
8.4 years ago by
Ian
6.1k
2
votes
0
replies
3.7k
views
Answer:
A: ChIP-seq Input replicate correlation
8.5 years ago by
Ian
6.1k
1
vote
0
replies
5.8k
views
Comment:
C: Peak calling for broad histone-modification regions
8.5 years ago by
Ian
6.1k
2
votes
1
reply
8.1k
views
Answer:
A: Filter MACS peaks by enrichment/FDR?
8.5 years ago by
Ian
6.1k
0
votes
1
reply
5.1k
views
Comment:
C: prepare pair-ended reads for peak calling
8.6 years ago by
Ian
6.1k
0
votes
1
reply
5.1k
views
Comment:
C: prepare pair-ended reads for peak calling
8.6 years ago by
Ian
6.1k
0
votes
1
reply
32k
views
Comment:
C: Extract Sequence From Fasta File Using Ids From A Separate File
8.7 years ago by
Ian
6.1k
0
votes
1
reply
3.5k
views
Comment:
C: How to extend variable length intervals to the same final length?
8.7 years ago by
Ian
6.1k
0
votes
0
replies
3.5k
views
Comment:
C: How to extend variable length intervals to the same final length?
8.7 years ago by
Ian
6.1k
5
votes
6
replies
3.5k
views
How to extend variable length intervals to the same final length?
bedtools
slop
intervals
footprint
updated 8.7 years ago by
Alex Reynolds
36k • written 8.7 years ago by
Ian
6.1k
1
vote
1
reply
2.6k
views
Answer:
A: ChIP on chip array cover genome or promoter regions?
8.8 years ago by
Ian
6.1k
3
votes
1
reply
8.6k
views
Answer:
A: Paired end and single end with MACS2
8.8 years ago by
Ian
6.1k
0
votes
1
reply
2.6k
views
Comment:
C: ChIP on chip array cover genome or promoter regions?
8.8 years ago by
Ian
6.1k
16
votes
1
reply
270k
views
Comment:
C: Tools To Calculate Average Coverage For A Bam File?
8.8 years ago by
Ian
6.1k
0
votes
0
replies
1.4k
views
Answer:
A: Chip Seq controls
8.9 years ago by
Ian
6.1k
1
vote
1
reply
2.9k
views
Answer:
A: How analyse chip-exo paired read data and get BigWig or Peaks called?
9.0 years ago by
Ian
6.1k
0
votes
1
reply
6.2k
views
Answer:
A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
9.0 years ago by
Ian
6.1k
0
votes
2
replies
5.7k
views
Comment:
C: call differential peaks H3K27ac
9.0 years ago by
Ian
6.1k
2
votes
1
reply
5.7k
views
Answer:
A: call differential peaks H3K27ac
9.0 years ago by
Ian
6.1k
1
vote
0
replies
6.0k
views
Answer:
A: Tag size in MACS and MACS2
9.1 years ago by
Ian
6.1k
1
vote
0
replies
5.6k
views
Comment:
C: Trim adapter sequence for single-end
9.2 years ago by
Ian
6.1k
6
votes
3
replies
9.6k
views
Tool:
Masc - A Tool For Calculating Mean Fragment Size For Chip-Seq Peak Calling Analysis
chip-seq
updated 2.4 years ago by
Ram
45k • written 12.7 years ago by
Ian
6.1k
0
votes
0
replies
1.8k
views
Answer:
A: TFBS finding in whole genome
9.3 years ago by
Ian
6.1k
5
votes
0
replies
37k
views
Answer:
A: Is Paired End analysis possible with FASTQC?
9.5 years ago by
Ian
6.1k
0
votes
1
reply
3.6k
views
Comment:
C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
9.5 years ago by
Ian
6.1k
0
votes
0
replies
3.6k
views
Comment:
C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
9.5 years ago by
Ian
6.1k
3
votes
5
replies
3.6k
views
Problem viewing a bigWig file on UCSC browser - any debugging solutions?
ucsc
bigwig
9.5 years ago by
Ian
6.1k
1
vote
0
replies
7.9k
views
Comment:
C: Chip-Seq Peak hight difference between BED and BW file formats.
9.6 years ago by
Ian
6.1k
0
votes
0
replies
6.4k
views
Comment:
C: Do I need to remove adapter if FastQC showed no adapter content.
9.6 years ago by
Ian
6.1k
1
vote
1
reply
59k
views
Answer:
A: Visualization of ChIP-seq data using Heatmaps
9.7 years ago by
Ian
6.1k
4
votes
3
replies
73k
views
Answer:
A: How To Convert Gencode Gtf Into Bed Format ?
updated 9.7 years ago by
Alex Reynolds
36k • written 13.0 years ago by
Ian
6.1k
0
votes
0
replies
4.5k
views
Comment:
C: 'effective genome size' , how precisse does it have to be?
9.7 years ago by
Ian
6.1k
0
votes
0
replies
2.5k
views
Answer:
Answer: Does sequencing depth affect MACS2 q-values?
updated 3.3 years ago by
Ram
45k • written 9.7 years ago by
Ian
6.1k
1
vote
1
reply
7.9k
views
Comment:
C: Chip-Seq Peak hight difference between BED and BW file formats.
9.8 years ago by
Ian
6.1k
0
votes
0
replies
9.6k
views
Comment:
C: Doubts related to MACS tool
9.8 years ago by
Ian
6.1k
468 results • Page
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