Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
4
votes
1
reply
7.9k
views
Answer: A: How to choose Trimmomatic's parameter 'MINLEN '?
6.9 years ago by Ian 6.0k
2
votes
0
replies
2.9k
views
Answer: A: ChIP-seq Input replicate correlation
6.9 years ago by Ian 6.0k
1
vote
0
replies
4.2k
views
Comment: C: Peak calling for broad histone-modification regions
7.0 years ago by Ian 6.0k
2
votes
1
reply
6.1k
views
Answer: A: Filter MACS peaks by enrichment/FDR?
7.0 years ago by Ian 6.0k
0
votes
1
reply
3.7k
views
Comment: C: prepare pair-ended reads for peak calling
7.0 years ago by Ian 6.0k
0
votes
1
reply
3.7k
views
Comment: C: prepare pair-ended reads for peak calling
7.1 years ago by Ian 6.0k
0
votes
1
reply
29k
views
Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
7.1 years ago by Ian 6.0k
0
votes
1
reply
2.5k
views
Comment: C: How to extend variable length intervals to the same final length?
7.1 years ago by Ian 6.0k
0
votes
0
replies
2.5k
views
Comment: C: How to extend variable length intervals to the same final length?
7.1 years ago by Ian 6.0k
5
votes
6
replies
2.5k
views
How to extend variable length intervals to the same final length?
bedtools slop intervals footprint
updated 7.1 years ago by 35k • written 7.1 years ago by 6.0k
1
vote
1
reply
1.9k
views
Answer: A: ChIP on chip array cover genome or promoter regions?
7.2 years ago by Ian 6.0k
3
votes
1
reply
7.4k
views
Answer: A: Paired end and single end with MACS2
7.2 years ago by Ian 6.0k
0
votes
1
reply
1.9k
views
Comment: C: ChIP on chip array cover genome or promoter regions?
7.2 years ago by Ian 6.0k
15
votes
1
reply
239k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
7.3 years ago by Ian 6.0k
0
votes
0
replies
1.2k
views
Answer: A: Chip Seq controls
7.4 years ago by Ian 6.0k
1
vote
1
reply
2.2k
views
Answer: A: How analyse chip-exo paired read data and get BigWig or Peaks called?
7.4 years ago by Ian 6.0k
0
votes
1
reply
5.0k
views
Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
7.4 years ago by Ian 6.0k
0
votes
2
replies
4.1k
views
Comment: C: call differential peaks H3K27ac
7.5 years ago by Ian 6.0k
2
votes
1
reply
4.1k
views
Answer: A: call differential peaks H3K27ac
7.5 years ago by Ian 6.0k
1
vote
0
replies
5.2k
views
Answer: A: Tag size in MACS and MACS2
7.5 years ago by Ian 6.0k
1
vote
0
replies
4.8k
views
Comment: C: Trim adapter sequence for single-end
7.6 years ago by Ian 6.0k
6
votes
3
replies
8.8k
views
Tool: Masc - A Tool For Calculating Mean Fragment Size For Chip-Seq Peak Calling Analysis
chip-seq
updated 10 months ago by 43k • written 11.2 years ago by 6.0k
0
votes
0
replies
1.5k
views
Answer: A: TFBS finding in whole genome
7.8 years ago by Ian 6.0k
5
votes
0
replies
31k
views
Answer: A: Is Paired End analysis possible with FASTQC?
8.0 years ago by Ian 6.0k
0
votes
1
reply
2.8k
views
Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.0 years ago by Ian 6.0k
0
votes
0
replies
2.8k
views
Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.0 years ago by Ian 6.0k
3
votes
5
replies
2.8k
views
Problem viewing a bigWig file on UCSC browser - any debugging solutions?
ucsc bigwig
8.0 years ago by Ian 6.0k
1
vote
0
replies
6.5k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.1 years ago by Ian 6.0k
0
votes
0
replies
5.6k
views
Comment: C: Do I need to remove adapter if FastQC showed no adapter content.
8.1 years ago by Ian 6.0k
1
vote
1
reply
50k
views
Answer: A: Visualization of ChIP-seq data using Heatmaps
8.1 years ago by Ian 6.0k
3
votes
3
replies
64k
views
Answer: A: How To Convert Gencode Gtf Into Bed Format ?
updated 8.2 years ago by 35k • written 11.5 years ago by 6.0k
0
votes
0
replies
3.7k
views
Comment: C: 'effective genome size' , how precisse does it have to be?
8.2 years ago by Ian 6.0k
0
votes
0
replies
2.2k
views
Answer: Answer: Does sequencing depth affect MACS2 q-values?
updated 21 months ago by 43k • written 8.2 years ago by 6.0k
1
vote
1
reply
6.5k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.3 years ago by Ian 6.0k
0
votes
0
replies
7.6k
views
Comment: C: Doubts related to MACS tool
8.3 years ago by Ian 6.0k
0
votes
1
reply
3.7k
views
Answer: A: Peak calling with MACS for DNase-seq data and Peak annotation by Homer
8.4 years ago by Ian 6.0k
1
vote
1
reply
7.3k
views
Comment: C: Possible augmented reality tools for bioinformatics and current problems
8.4 years ago by Ian 6.0k
0
votes
1
reply
1.9k
views
Answer: A: How to test for enrichment of three bed files that 'may' form a complex
8.4 years ago by Ian 6.0k
0
votes
0
replies
3.7k
views
Answer: A: Filtering fastq (by quality score and length), optimum criteria?
8.5 years ago by Ian 6.0k
0
votes
1
reply
6.8k
views
Answer: Answer: Bowtie2 or RSEM (with Bowtie2) alignment of PE reads with reference transcriptom
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
3
votes
0
replies
3.2k
views
Answer: Answer: The way to compare ChIPSeq peaks enrichment level in different samples
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
0
votes
1
reply
2.5k
views
Answer: Answer: mfold parameter in MACS on Galaxy/ Galaxy Cistrome
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
0
votes
1
reply
3.7k
views
Comment: Comment: How to remove kmer profiles?
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
26
votes
17
replies
7.7k
views
8 follow
Tutorial: virtualenv - running Python based software in isolation
python virtualenv
updated 19 months ago by 43k • written 9.7 years ago by 6.0k
7
votes
3
replies
2.5k
views
Differential methylation analysis: sequencing biological replicates versus pooled samples?
dma differential-methylation
updated 19 months ago by 43k • written 8.6 years ago by 6.0k
0
votes
1
reply
3.2k
views
Comment: Comment: Best to overlap hundreds of BED files to one master BED file?
updated 18 months ago by 43k • written 8.7 years ago by 6.0k
0
votes
2
replies
3.2k
views
Comment: Comment: Best to overlap hundreds of BED files to one master BED file?
updated 18 months ago by 43k • written 8.7 years ago by 6.0k
7
votes
6
replies
3.2k
views
Best to overlap hundreds of BED files to one master BED file?
bed overlap intersect
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
2
votes
1
reply
6.5k
views
Answer: Answer: MACS2 for K27me3 peak calling
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
1
vote
0
replies
3.2k
views
Answer: Answer: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 18 months ago by 43k • written 8.8 years ago by 6.0k
453 results • Page 3 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6