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0
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2
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1000
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Answer: Answer: GATK ApplyVQSR filtering doesnt work
2.1 years ago by rbagnall ★ 1.8k
0
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0
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820
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Comment: C: Merging genomic databases from different intervals (GenomicsDBImport)
2.4 years ago by rbagnall ★ 1.8k
1
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0
replies
1.6k
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Comment: C: Is there a database of haploinsufficiency scores or status for each gene?
2.7 years ago by rbagnall ★ 1.8k
2
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1
reply
1.6k
views
Answer: A: Is there a database of haploinsufficiency scores or status for each gene?
2.7 years ago by rbagnall ★ 1.8k
3
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0
replies
938
views
Answer: A: VQSR no r file being created
2.7 years ago by rbagnall ★ 1.8k
0
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1
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1.5k
views
Comment: C: Discrepancy between UCSC table browser PhyloP score and Bedmap mapped PhyloP sco
3.0 years ago by rbagnall ★ 1.8k
0
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1
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1.2k
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Comment: C: Figure out genotype from VCF line
updated 3.1 years ago by 39k • written 3.1 years ago by ★ 1.8k
3
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1
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1.2k
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Answer: A: Figure out genotype from VCF line
3.1 years ago by rbagnall ★ 1.8k
0
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1
reply
1.3k
views
Comment: C: combining / merging overlapping reads in bam file to one in silico long read
3.1 years ago by rbagnall ★ 1.8k
0
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1
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1.3k
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Answer: A: combining / merging overlapping reads in bam file to one in silico long read
3.1 years ago by rbagnall ★ 1.8k
1
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0
replies
1.1k
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Answer: A: determine exon number from variant genomic coordinates
3.1 years ago by rbagnall ★ 1.8k
3
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0
replies
1.1k
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Answer: A: Does Splice AI use GRCh38?
3.1 years ago by rbagnall ★ 1.8k
0
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0
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1.1k
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Comment: C: What's the best way to serve VCF data on web?
3.2 years ago by rbagnall ★ 1.8k
1
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0
replies
3.1k
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Comment: C: Combining VCF files using GATK
3.2 years ago by rbagnall ★ 1.8k
1
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1
reply
898
views
Answer: C: Problem using SED for change IDs in gff file
3.3 years ago by rbagnall ★ 1.8k
2
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1
reply
1.2k
views
Answer: A: GNOMAD exome vcf field missing? number of hemizygous individuals
3.4 years ago by rbagnall ★ 1.8k
1
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0
replies
865
views
Comment: C: Flanking sequence retreival
3.4 years ago by rbagnall ★ 1.8k
1
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1
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865
views
Answer: A: Flanking sequence retreival
3.4 years ago by rbagnall ★ 1.8k
1
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0
replies
2.1k
views
Answer: A: How can i run programs like SIFT, PolyPhen, PhDSNP from my java code
updated 3.4 years ago by 39k • written 9.0 years ago by ★ 1.8k
1
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0
replies
2.3k
views
Answer: A: Access To Multiple Sample High-Throughput Sequencing Diploid Data With Snps Vali
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 1.8k
3
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0
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1.9k
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Answer: A: Trouble filtering CDS regions from Nextera Enrichment design
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 1.8k
0
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1
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3.1k
views
Answer: A: Targetscan prediction locally
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 1.8k
1
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1
reply
2.3k
views
Answer: A: Illumina Custom amplicon data issue
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 1.8k
1
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2
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3.0k
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Comment: C: gene identification by exome seq of case control
updated 3.5 years ago by 39k • written 9.1 years ago by ★ 1.8k
3
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2
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3.0k
views
Answer: A: gene identification by exome seq of case control
updated 3.5 years ago by 39k • written 9.1 years ago by ★ 1.8k
0
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0
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2.4k
views
Comment: C: How can I find the most studied SNP of a gene?
updated 3.5 years ago by 39k • written 7.4 years ago by ★ 1.8k
1
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3
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2.4k
views
Answer: A: How can I find the most studied SNP of a gene?
updated 3.5 years ago by 39k • written 7.4 years ago by ★ 1.8k
2
votes
1
reply
766
views
Answer: A: Limitation of UKBB genotyping/sequencing data in drug target identificantion
3.5 years ago by rbagnall ★ 1.8k
0
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0
replies
2.8k
views
Comment: C: LOD score of a single genotype
updated 3.5 years ago by 39k • written 7.5 years ago by ★ 1.8k
2
votes
1
reply
798
views
Comment: C: Is 1 deleted T in a T stretch always detected, assuming enough coverage of cours
3.5 years ago by rbagnall ★ 1.8k
0
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1
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798
views
Comment: C: Is 1 deleted T in a T stretch always detected, assuming enough coverage of cours
3.5 years ago by rbagnall ★ 1.8k
1
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1
reply
1.7k
views
Answer: A: How to effectively use GATK haplotype caller with -L breaking up BAM files
3.5 years ago by rbagnall ★ 1.8k
2
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0
replies
2.0k
views
Comment: C: Number of snps are very low
updated 3.6 years ago by 39k • written 7.6 years ago by ★ 1.8k
1
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1
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1.4k
views
Comment: C: VCF file format
updated 3.6 years ago by 39k • written 7.7 years ago by ★ 1.8k
0
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0
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2.0k
views
Comment: C: How many base pairs are there in All exon V4+UTR from Agilent manufacture?
updated 3.6 years ago by 39k • written 7.7 years ago by ★ 1.8k
1
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1
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2.0k
views
Answer: A: How many base pairs are there in All exon V4+UTR from Agilent manufacture?
updated 3.6 years ago by 39k • written 7.7 years ago by ★ 1.8k
0
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2
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1.8k
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Answer: A: Merging sets of autosomal SNPs from the same array, but I am losing ~50,000 SNPs
updated 3.6 years ago by 39k • written 7.9 years ago by ★ 1.8k
0
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1
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3.4k
views
Comment: C: Large tab-delimited table of SNP data, how to filter out some rows based on rsID
updated 3.6 years ago by 39k • written 8.0 years ago by ★ 1.8k
1
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0
replies
1.4k
views
Comment: C: Extract variants from genomic range from gnomAD GRCh38
3.6 years ago by rbagnall ★ 1.8k
0
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1
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6.1k
views
Comment: C: How can I download snp genotype file from 1000 Genome?
updated 3.6 years ago by 39k • written 8.3 years ago by ★ 1.8k
2
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1
reply
6.1k
views
Answer: Answer: How can I download snp genotype file from 1000 Genome?
updated 14 months ago by 39k • written 8.3 years ago by ★ 1.8k
1
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0
replies
1.4k
views
Answer: C: awk extract certain line
3.8 years ago by rbagnall ★ 1.8k
2
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0
replies
1.3k
views
Comment: C: how can a DELETION be not a NULL variant?
3.9 years ago by rbagnall ★ 1.8k
0
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1
reply
8.8k
views
Comment: C: Download all eQTL data for all the 9 tissues from GTEx Portal
4.0 years ago by rbagnall ★ 1.8k
0
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1
reply
856
views
Comment: C: How do we call this phenomenon in evolution?
4.5 years ago by rbagnall ★ 1.8k
0
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1
reply
2.6k
views
Answer: A: RNA-seq alignment rate is too low.
4.5 years ago by rbagnall ★ 1.8k
0
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0
replies
2.8k
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Answer: A: Looking for walkthrough guide on Rare Variant Association Analysis
4.8 years ago by rbagnall ★ 1.8k
3
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0
replies
4.7k
views
Answer: A: Detecting Homozygous Insertion from Sanger Seq
4.9 years ago by rbagnall ★ 1.8k
0
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1
reply
4.2k
views
Comment: C: no successful variants lifted over from hs37d5_plusRibo_plusOncoViruses_plusERCC
4.9 years ago by rbagnall ★ 1.8k
1
vote
1
reply
2.4k
views
Comment: C: Find Intersections Between ClinVar Track and VCF In IGV
4.9 years ago by rbagnall ★ 1.8k
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