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Answer: Answer: GATK ApplyVQSR filtering doesnt work
2.9 years ago by rbagnall ★ 1.8k
3
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1
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2.0k
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Answer: A: Is there a database of haploinsufficiency scores or status for each gene?
3.6 years ago by rbagnall ★ 1.8k
3
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0
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1.3k
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Answer: A: VQSR no r file being created
3.6 years ago by rbagnall ★ 1.8k
3
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1
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1.6k
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Answer: A: Figure out genotype from VCF line
4.0 years ago by rbagnall ★ 1.8k
0
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1
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1.6k
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Answer: A: combining / merging overlapping reads in bam file to one in silico long read
4.0 years ago by rbagnall ★ 1.8k
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0
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1.4k
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Answer: A: determine exon number from variant genomic coordinates
4.0 years ago by rbagnall ★ 1.8k
3
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0
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1.3k
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Answer: A: Does Splice AI use GRCh38?
4.0 years ago by rbagnall ★ 1.8k
1
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1
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1.1k
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Answer: C: Problem using SED for change IDs in gff file
4.1 years ago by rbagnall ★ 1.8k
2
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1
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1.6k
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Answer: A: GNOMAD exome vcf field missing? number of hemizygous individuals
4.2 years ago by rbagnall ★ 1.8k
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1
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1.2k
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Answer: A: Flanking sequence retreival
4.3 years ago by rbagnall ★ 1.8k
1
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0
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2.2k
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Answer: A: How can i run programs like SIFT, PolyPhen, PhDSNP from my java code
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.8k
1
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0
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Answer: A: Access To Multiple Sample High-Throughput Sequencing Diploid Data With Snps Vali
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.8k
3
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0
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Answer: A: Trouble filtering CDS regions from Nextera Enrichment design
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.8k
0
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1
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3.3k
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Answer: A: Targetscan prediction locally
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 1.8k
1
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1
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2.5k
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Answer: A: Illumina Custom amplicon data issue
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 1.8k
3
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2
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3.4k
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Answer: A: gene identification by exome seq of case control
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 1.8k
1
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3
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2.7k
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Answer: A: How can I find the most studied SNP of a gene?
updated 4.3 years ago by 43k • written 8.3 years ago by ★ 1.8k
2
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1
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998
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Answer: A: Limitation of UKBB genotyping/sequencing data in drug target identificantion
4.4 years ago by rbagnall ★ 1.8k
1
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1
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2.0k
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Answer: A: How to effectively use GATK haplotype caller with -L breaking up BAM files
4.4 years ago by rbagnall ★ 1.8k
1
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1
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2.3k
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Answer: A: How many base pairs are there in All exon V4+UTR from Agilent manufacture?
updated 4.4 years ago by 43k • written 8.6 years ago by ★ 1.8k
0
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2
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Answer: A: Merging sets of autosomal SNPs from the same array, but I am losing ~50,000 SNPs
updated 4.5 years ago by 43k • written 8.8 years ago by ★ 1.8k
2
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1
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6.6k
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Answer: Answer: How can I download snp genotype file from 1000 Genome?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 1.8k
1
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0
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1.8k
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Answer: C: awk extract certain line
4.7 years ago by rbagnall ★ 1.8k
0
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1
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3.3k
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Answer: A: RNA-seq alignment rate is too low.
5.4 years ago by rbagnall ★ 1.8k
0
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0
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3.1k
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Answer: A: Looking for walkthrough guide on Rare Variant Association Analysis
5.7 years ago by rbagnall ★ 1.8k
3
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0
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5.5k
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Answer: A: Detecting Homozygous Insertion from Sanger Seq
5.7 years ago by rbagnall ★ 1.8k
3
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1
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2.9k
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Answer: A: Find Intersections Between ClinVar Track and VCF In IGV
5.8 years ago by rbagnall ★ 1.8k
1
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1
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2.5k
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Answer: A: gnomad_AF from VEP is NA
6.0 years ago by rbagnall ★ 1.8k
3
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2
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5.1k
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Answer: A: snpEff inappropriate interpretation of variants?
6.7 years ago by rbagnall ★ 1.8k
1
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0
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2.7k
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Answer: A: Which tool to calculate per site stats on vcf file?
6.8 years ago by rbagnall ★ 1.8k
0
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0
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1.9k
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Answer: A: Extracting Codons from a SNP alignment
6.8 years ago by rbagnall ★ 1.8k
0
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1
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2.3k
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Answer: A: CNVnator error :Can't determine length for 'chr1'. No reference genome specified
6.9 years ago by rbagnall ★ 1.8k
1
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0
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2.9k
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Answer: A: Human Mitochondrial Variants Annotation
7.0 years ago by rbagnall ★ 1.8k
1
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0
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1.6k
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Answer: A: Do People Import VCF Files Into Databases? (2016 version)
7.6 years ago by rbagnall ★ 1.8k
0
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0
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1.2k
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Answer: A: Finding variations in mitochondrial genomes
7.7 years ago by rbagnall ★ 1.8k
1
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1
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1.5k
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Answer: Answer: Number of SNPs captured by targeted sequencing panels
updated 12 months ago by 43k • written 8.0 years ago by ★ 1.8k
1
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0
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1.4k
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Answer: A: How to retrieve SNP numbers from the VCF then find information about them whethe
8.0 years ago by rbagnall ★ 1.8k
1
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1
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2.0k
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Answer: A: Targeted capture sequencing data
8.0 years ago by rbagnall ★ 1.8k
0
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0
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1.4k
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Answer: A: Dataset for NGS
8.1 years ago by rbagnall ★ 1.8k
1
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0
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1.8k
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Answer: A: Can a dsRNA get sequenced on illumina with the 125bp pair end library meant for
8.1 years ago by rbagnall ★ 1.8k
1
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1
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1.6k
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Answer: A: sequence head change!
8.1 years ago by rbagnall ★ 1.8k
4
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1
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1.8k
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Answer: A: Confusing HGVS notation
8.1 years ago by rbagnall ★ 1.8k
5
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1
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6.0k
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Answer: A: Explain bioinformatics to a 10 year old
8.1 years ago by rbagnall ★ 1.8k
0
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1
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6.6k
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Answer: A: From gene symbol list to their coordinates
8.1 years ago by rbagnall ★ 1.8k
4
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1
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7.3k
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Answer: Answer: (SIFT, Polyphen, PROVEAN) vs. (ANNOVAR) vs. (LOFTEE)
updated 21 months ago by 43k • written 8.2 years ago by ★ 1.8k
1
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0
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1.6k
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Answer: Answer: RealignerTargetCreator GATK alignment
updated 18 months ago by 43k • written 8.6 years ago by ★ 1.8k
0
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0
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8.5k
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Answer: Answer: PCA plot Fig software
updated 19 months ago by 43k • written 8.7 years ago by ★ 1.8k
4
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0
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2.2k
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Answer: Answer: Looking for Jewish Exoms
updated 18 months ago by 43k • written 8.8 years ago by ★ 1.8k
5
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1
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5.0k
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Answer: Answer: EIGENSOFT : Ploteig, 3D Plots
updated 16 months ago by 43k • written 8.8 years ago by ★ 1.8k
0
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0
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6.8k
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Answer: A: eigenstrat smartpca input files
8.9 years ago by rbagnall ★ 1.8k
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