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Showing :
questions
9
votes
3
replies
1.9k
views
How to find polyA sites from gtf/gff?
genome
gene
updated 2.2 years ago by
ks.bis
• 0 • written 6.0 years ago by
goodez
▴ 640
16
votes
9
replies
6.8k
views
Find consensus overlap between many bed files
genome
bedtools
overlap
intersect
updated 4.0 years ago by
Biostar
20 • written 5.9 years ago by
goodez
▴ 640
2
votes
5
replies
2.9k
views
Identify RNA-seq reads containing polyA sequence
RNA-Seq
updated 5.0 years ago by
Buffo
★ 2.4k • written 5.0 years ago by
goodez
▴ 640
3
votes
12
replies
1.9k
views
Where to find a list of stress response genes?
gene
annotation
updated 5.4 years ago by
Benn
8.3k • written 5.5 years ago by
goodez
▴ 640
5
votes
1
reply
2.7k
views
Bowtie2 reports no secondary alignments
alignment
bowtie2
5.5 years ago by
goodez
▴ 640
1
vote
6
replies
6.1k
views
Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
genome
ChIP-Seq
updated 16 months ago by
Gopal
• 0 • written 5.6 years ago by
goodez
▴ 640
0
votes
1
reply
948
views
How/where to obtain a bigwig or bedgraph of unmappable genome regions?
alignment
genome
5.6 years ago by
goodez
▴ 640
1
vote
3
replies
1.6k
views
Where to find snRNA annotations?
annotation
ChIP-Seq
5.6 years ago by
goodez
▴ 640
7
votes
5
replies
5.1k
views
Quick and easy way to get alignment stats from many SAM/BAM files?
RNA-Seq
alignment
5.8 years ago by
goodez
▴ 640
1
vote
4
replies
1.9k
views
Normalize coverage to spike-in chromatin
ChIP-Seq
Normalization
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
goodez
▴ 640
0
votes
0
replies
2.2k
views
Normalization using spike-in chromatin
ChIP-Seq
Normalization
Spike-in
5.9 years ago by
goodez
▴ 640
1
vote
4
replies
1.5k
views
Include values of zero in TSS metaplot?
ChIP-Seq
updated 6.0 years ago by
Friederike
8.9k • written 6.0 years ago by
goodez
▴ 640
12 results • Page
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