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26k
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Comment: C: What is the right illumina universal adapter sequence for trimming paired-end re
4.1 years ago by MatthewP ★ 1.4k
2
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2
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5.8k
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Answer: A: HISAT2- (ERR): hisat2-align exited with value 134
4.1 years ago by MatthewP ★ 1.4k
0
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0
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8.0k
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Comment: C: ATAC-seq +4 -5 shift
4.1 years ago by MatthewP ★ 1.4k
1
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0
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1.8k
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Answer: A: Web scraping in the KEGG db
4.2 years ago by MatthewP ★ 1.4k
0
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1
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1.2k
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Comment: C: How to parse text correctly for bowtie2 --rg parameter?
4.2 years ago by MatthewP ★ 1.4k
0
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1
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1.2k
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Comment: C: How to parse text correctly for bowtie2 --rg parameter?
4.2 years ago by MatthewP ★ 1.4k
0
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5
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1.2k
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How to parse text correctly for bowtie2 --rg parameter?
bowtie2
4.2 years ago by MatthewP ★ 1.4k
0
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1
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1.9k
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Comment: C: error in MarkDuplicates Picard
4.2 years ago by MatthewP ★ 1.4k
1
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1
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1.5k
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Comment: C: Uneven number of technical replicates for biological replicates in RNA-seq
4.3 years ago by MatthewP ★ 1.4k
0
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0
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664
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Answer: A: From Fastq to vcf
4.3 years ago by MatthewP ★ 1.4k
0
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0
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1.7k
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Answer: A: how Creat un-aligne file with bowtie?
4.3 years ago by MatthewP ★ 1.4k
0
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1
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896
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Comment: C: Help improve search paper skill.
4.3 years ago by MatthewP ★ 1.4k
1
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4
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896
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Help improve search paper skill.
pubmed
updated 4.3 years ago by ▴ 180 • written 4.3 years ago by ★ 1.4k
0
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0
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916
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Comment: C: Remove reads where quality score length does not equal sequence length
4.3 years ago by MatthewP ★ 1.4k
1
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1
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993
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Answer: A: Does anyone have experience of methylation alignment tool "Bismark"?
4.3 years ago by MatthewP ★ 1.4k
1
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1
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1.1k
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Answer: A: How to download matrix of the "GSE73554"
4.3 years ago by MatthewP ★ 1.4k
1
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1
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1.2k
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Bismark alignment report total C base number problem.
WGBS Bismark
4.3 years ago by MatthewP ★ 1.4k
1
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0
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1.2k
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Answer: A: Bismark alignment report total C base number problem.
4.3 years ago by MatthewP ★ 1.4k
4
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0
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1.3k
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Answer: A: Barplot labeling squeezed the bars
4.3 years ago by MatthewP ★ 1.4k
0
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0
replies
679
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Tools to extract circRNA data from rRNA-depleted RNA-seq?
circRNA RNA-Seq
4.4 years ago by MatthewP ★ 1.4k
3
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1
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1.0k
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Answer: A: Boxplot or ggplot
4.5 years ago by MatthewP ★ 1.4k
2
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1
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4.2k
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Answer: A: How can I use Seurat with *_filtered_gene_bc_matrices_h5.h5 files
4.5 years ago by MatthewP ★ 1.4k
0
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1
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973
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Answer: A: How to get a snapshot for the content of some file on Pfam ?
4.5 years ago by MatthewP ★ 1.4k
1
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1
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2.6k
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Comment: C: Massive L2FC in DESeq2
4.5 years ago by MatthewP ★ 1.4k
1
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0
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13k
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Comment: C: Automatic Outlier Detection for RNA-seq data
4.5 years ago by MatthewP ★ 1.4k
1
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1
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9.6k
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Answer: A: gseGO: no term enriched under specific pvalueCutoff
4.5 years ago by MatthewP ★ 1.4k
0
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0
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726
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DESeq2 rlog output some genes all zero value.
RNA-Seq DESeq2
4.5 years ago by MatthewP ★ 1.4k
1
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2
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6.1k
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Comment: C: How to do Disease-Free survival analysis with TCGA data ??
4.5 years ago by MatthewP ★ 1.4k
0
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1
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6.1k
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Answer: A: How to do Disease-Free survival analysis with TCGA data ??
4.5 years ago by MatthewP ★ 1.4k
2
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0
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6.5k
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Answer: A: Best practice for analysing ATAC-seq data
4.5 years ago by MatthewP ★ 1.4k
0
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0
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3.7k
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Answer: A: vcf2maf VEP annotated VCF conversion
4.6 years ago by MatthewP ★ 1.4k
2
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1
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1.5k
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Comment: C: GSEA analysis RNA-seq data
4.6 years ago by MatthewP ★ 1.4k
2
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1
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1.5k
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Answer: C: GSEA analysis RNA-seq data
4.6 years ago by MatthewP ★ 1.4k
0
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1
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3.5k
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Conda environment Rtools problem
R
updated 4.6 years ago by ▴ 930 • written 4.6 years ago by ★ 1.4k
2
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1
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17k
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Comment: C: Clusterprofiler error: No gene can be mapped
4.6 years ago by MatthewP ★ 1.4k
0
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0
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791
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Answer: A: How to remove reads supporting the same fragment that other reads support
4.6 years ago by MatthewP ★ 1.4k
3
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1
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17k
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Answer: C: Clusterprofiler error: No gene can be mapped
4.6 years ago by MatthewP ★ 1.4k
2
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0
replies
25k
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Answer: A: Conversion of Gene Name to Ensemble ID
4.6 years ago by MatthewP ★ 1.4k
0
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0
replies
1.1k
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Comment: C: DEGS analysis with DESeq2?
4.6 years ago by MatthewP ★ 1.4k
0
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1
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1.6k
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Comment: C: How to get negative 2 ks test D value in R?
4.6 years ago by MatthewP ★ 1.4k
0
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3
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1.6k
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How to get negative 2 ks test D value in R?
RNA-Seq statics
4.6 years ago by MatthewP ★ 1.4k
0
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0
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2.8k
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Comment: C: TCGA TMB: What exome size to use?
4.7 years ago by MatthewP ★ 1.4k
0
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0
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4.9k
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Comment: C: WGCNA exportNetworkToCytoscape issue!!
4.7 years ago by MatthewP ★ 1.4k
0
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0
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2.0k
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Comment: C: How maftools oncoplot classify variant type?
4.7 years ago by MatthewP ★ 1.4k
0
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1
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2.0k
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How maftools oncoplot classify variant type?
maftools
4.7 years ago by MatthewP ★ 1.4k
0
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0
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2.4k
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Seeks good way to convert GB_LIST to SYMBOL
geo
4.8 years ago by MatthewP ★ 1.4k
1
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0
replies
15k
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Answer: A: Building Dict File for GATK
4.8 years ago by MatthewP ★ 1.4k
0
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0
replies
12k
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Comment: C: problems with MAF for MutSigCV (vcf2maf)
4.8 years ago by MatthewP ★ 1.4k
1
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0
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13k
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Answer: A: Clusterprofiler gseGO and GSEA
4.8 years ago by MatthewP ★ 1.4k
0
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0
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2.2k
views
Answer: A: deleting TCGA replicated samples
4.8 years ago by MatthewP ★ 1.4k
274 results • Page 3 of 6
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