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Comment: Comment: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
3 months ago by jordi.planells ▴ 480
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1.8k
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Comment: Comment: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
3 months ago by jordi.planells ▴ 480
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1
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767
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Comment: Comment: --normalizeUsing RPGC
3 months ago by jordi.planells ▴ 480
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767
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Comment: Comment: --normalizeUsing RPGC
3 months ago by jordi.planells ▴ 480
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319
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Deeptools clustering differs when clustering sample as standalone and together with other samples
deepTools
13 months ago by jordi.planells ▴ 480
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455
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Understanding HiC compartimentalization data
HiC
2.5 years ago by jordi.planells ▴ 480
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2.0k
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Comment: Comment: Picard MarkDuplicates failing without error message
2.9 years ago by jordi.planells ▴ 480
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2.0k
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Comment: Comment: Picard MarkDuplicates failing without error message
2.9 years ago by jordi.planells ▴ 480
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974
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Comment: Comment: How to achieve the goal "only genes with non-zero expression values in at least
3.0 years ago by jordi.planells ▴ 480
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1.1k
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Comment: Comment: how to create matrix from row data.
3.0 years ago by jordi.planells ▴ 480
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935
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Answer: Answer: How to add GO annotation terms (molecular function, component, biological proces
3.0 years ago by jordi.planells ▴ 480
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2.0k
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Comment: C: Bowtie2: Mate file error & internal exception
3.2 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Select and keep only some results from DESEq2
3.2 years ago by jordi.planells ▴ 480
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1
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1.1k
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Comment: C: Select and keep only some results from DESEq2
3.2 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Read count using htseq-count.
3.2 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Read count using htseq-count.
3.2 years ago by jordi.planells ▴ 480
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1
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1.3k
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Comment: C: Getting the fasta format of a list of genes
3.2 years ago by jordi.planells ▴ 480
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921
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Answer: A: The parameter of HISAT2 and samtools
3.2 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Change sample order in plotHeatmap?
3.2 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Change sample order in plotHeatmap?
3.2 years ago by jordi.planells ▴ 480
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873
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Comment: C: Calculating fold change...CONFUSION
3.2 years ago by jordi.planells ▴ 480
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1.5k
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Answer: A: Filtering of transcripts with more than two exons
3.2 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: DESeq2 for DEG in R
3.3 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: DESeq2 for DEG in R
3.3 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Huge difference between P and adj P value
3.3 years ago by jordi.planells ▴ 480
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1.3k
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Comment: C: bigwigs to reads in peaks
3.3 years ago by jordi.planells ▴ 480
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1.3k
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Comment: C: bigwigs to reads in peaks
3.3 years ago by jordi.planells ▴ 480
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910
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Answer: A: How to map reads onto human hg38 gene body regions instead of whole genome?
3.3 years ago by jordi.planells ▴ 480
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1.4k
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Comment: C: Interpretation of PCA plot
3.4 years ago by jordi.planells ▴ 480
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1.4k
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Comment: C: Interpretation of PCA plot
3.4 years ago by jordi.planells ▴ 480
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1.7k
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Comment: C: No coverage in macs2 peak summit!
3.4 years ago by jordi.planells ▴ 480
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1.0k
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Comment: C: Principle component analysis
3.4 years ago by jordi.planells ▴ 480
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2
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1.0k
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Comment: C: Principle component ananlysis
3.4 years ago by jordi.planells ▴ 480
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845
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Comment: C: DESeq2 discrepancy between analysis.
3.4 years ago by jordi.planells ▴ 480
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845
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DESeq2 discrepancy between analysis.
R RNA-Seq DESeq2
updated 3.4 years ago by 14k • written 3.4 years ago by ▴ 480
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1.2k
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Comment: C: How to evaluate gene expression
3.4 years ago by jordi.planells ▴ 480
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1.2k
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Comment: C: How to evaluate gene expression
3.4 years ago by jordi.planells ▴ 480
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1.2k
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Comment: C: How to evaluate gene expression
3.4 years ago by jordi.planells ▴ 480
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1.2k
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Answer: A: Calculate library complexity for Chip sep data
3.4 years ago by jordi.planells ▴ 480
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1
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8.6k
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Comment: C: Removing fastq duplicates
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 480
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920
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Comment: C: how to get input file of closest-features a bed-format file
3.5 years ago by jordi.planells ▴ 480
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920
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Comment: C: how to get input file of closest-features a bed-format file
3.5 years ago by jordi.planells ▴ 480
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509
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Answer: A: Find cooccurences of factors across multiple files
3.5 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Knock out genes and TPM
3.5 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Knock out genes and TPM
3.5 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Knock out genes and TPM
3.5 years ago by jordi.planells ▴ 480
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1.0k
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Answer: A: How to extract upstream and downstream of lncRNA in particular range?
3.5 years ago by jordi.planells ▴ 480
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920
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Comment: A: how to get input file of closest-features a bed-format file
3.5 years ago by jordi.planells ▴ 480
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1.2k
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Answer: A: Pilon software installation
3.5 years ago by jordi.planells ▴ 480
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1.3k
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Answer: A: intersect two file
3.5 years ago by jordi.planells ▴ 480
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