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2
votes
4
replies
785
views
popbam: command not found
popbam
2.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
626
views
Comment: Comment: How to add the PO tag in BAM file
2.1 years ago by taniamahmood38 ▴ 50
1
vote
2
replies
626
views
How to add the PO tag in BAM file
PO_tag BAM POPBAM
2.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
689
views
Comment: Comment: How to add @RG tags in vcf file?
2.1 years ago by taniamahmood38 ▴ 50
1
vote
2
replies
689
views
How to add @RG tags in vcf file?
vcf H_statistics POPBAM
updated 2.1 years ago by 161k • written 2.1 years ago by ▴ 50
0
votes
0
replies
296
views
How to resolve IndexError: too many indices for array?
pool-HMM python pooled-seq
2.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
312
views
-p argument in freebayes for pooled sample
freebayes variant-calling pool-seq vcf
updated 6 months ago by 43k • written 2.1 years ago by ▴ 50
0
votes
0
replies
498
views
Comment: Comment: Error in polymutt2 tool compilation
2.1 years ago by taniamahmood38 ▴ 50
0
votes
2
replies
498
views
Error in polymutt2 tool compilation
argument.h vcf2map polymutt2
2.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
459
views
Comment: Comment: Error: Could not open the input file
2.1 years ago by taniamahmood38 ▴ 50
1
vote
2
replies
459
views
Error: Could not open the input file
linux samtools pool-HMM
updated 10 months ago by 43k • written 2.1 years ago by ▴ 50
0
votes
0
replies
863
views
Comment: Comment: ImportError: cannot import name expm3
2.1 years ago by taniamahmood38 ▴ 50
1
vote
2
replies
863
views
ImportError: cannot import name expm3
linuxOS Pool-HMM SciPy python2
2.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
264
views
Issue with .map file generated using Plink software
genetic_map linuxOS .map_file Plink
2.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
3.0k
views
Comment: Comment: what do the bcftools ROH output "markers & quality" fields indicate ?
2.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.2k
views
Comment: Comment: Plant de novo genome assembly of illumina reads on linux
2.2 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.2k
views
Comment: Comment: Plant de novo genome assembly of illumina reads on linux
2.2 years ago by taniamahmood38 ▴ 50
2
votes
6
replies
1.2k
views
Plant de novo genome assembly of illumina reads on linux
de_novo_genome_assembly linux plant_illumina_data
2.2 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
736
views
Comment: Comment: How to resolve the warning message in detectRUNS on R software
2.2 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.3k
views
ImportError: cannot import name 'ft2font' from partially initialized module 'matplotlib'
bcftools matplotlib roh plot-roh.py
updated 10 months ago by 43k • written 2.2 years ago by ▴ 50
2
votes
2
replies
736
views
How to resolve the warning message in detectRUNS on R software
bcftools detectRUNS roh R
updated 10 months ago by 43k • written 2.2 years ago by ▴ 50
0
votes
1
reply
1.9k
views
Comment: Comment: How can I draw this plot?
2.2 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.9k
views
Comment: Comment: How can I draw this plot?
2.2 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
349
views
How to make Genetic map file required by bcftools
bcftools genetic-map roh
updated 10 months ago by 43k • written 2.2 years ago by ▴ 50
0
votes
0
replies
450
views
BCFtools roh analysis: Number of --estimate-AF samples: 0
bcftools roh AF
updated 10 months ago by 43k • written 2.2 years ago by ▴ 50
0
votes
0
replies
1.2k
views
Comment: Comment: libvcflib-tools error: Unable to correct problems, you have held broken packages
2.3 years ago by taniamahmood38 ▴ 50
0
votes
2
replies
1.2k
views
libvcflib-tools error: Unable to correct problems, you have held broken packages
vcflib ubuntu20.04 libvcflib-tools
2.3 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.5k
views
Comment: Comment: Selscan: ERROR: Alleles must be coded 0/1 only.
2.3 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.5k
views
Comment: Comment: Selscan: ERROR: Alleles must be coded 0/1 only.
2.3 years ago by taniamahmood38 ▴ 50
2
votes
5
replies
1.5k
views
Selscan: ERROR: Alleles must be coded 0/1 only.
VCF nsl Selscan
2.3 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.0k
views
A USER ERROR has occurred: no positional argument is defined for this tool.
GATK4 HaplotypeCaller BAM
updated 2.7 years ago by 43k • written 2.7 years ago by ▴ 50
0
votes
0
replies
522
views
GEMINI (GEnome MINIng) inheritance pattern command warning no affecteds in family 0
ubuntu GEnomeMINIng gemini
3.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.9k
views
Comment: C: Gemini Installation pybedtools version error
3.1 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.0k
views
Comment: C: Script for XP-EHH, EHH and iHS tests and phasing vcf file that works on all chro
3.2 years ago by taniamahmood38 ▴ 50
1
vote
2
replies
1.0k
views
Script for XP-EHH, EHH and iHS tests and phasing vcf file that works on all chromosome concurrently
WGS Pooled-Seq XPEHH EHH iHS
3.2 years ago by taniamahmood38 ▴ 50
1
vote
0
replies
971
views
Comment: C: Number of upregulated and downregulated genes from counts matrix
3.2 years ago by taniamahmood38 ▴ 50
1
vote
2
replies
971
views
Number of upregulated and downregulated genes from counts matrix
RNA-Seq DEGs up and downregulated genes
3.2 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
1.3k
views
Comment: C: Converting a BAM/VCF into genetic recombination map tsv file
3.2 years ago by taniamahmood38 ▴ 50
0
votes
1
reply
1.3k
views
Comment: C: Converting a BAM/VCF into genetic recombination map tsv file
3.2 years ago by taniamahmood38 ▴ 50
2
votes
4
replies
1.3k
views
Converting a BAM/VCF into genetic recombination map tsv file
.tsv file format --GeneMap SelScan BAM/VCF
3.2 years ago by taniamahmood38 ▴ 50
10
votes
15
replies
2.3k
views
Convert BCF to BAM
BCF to BAM Linux Ubuntu terminal Command line
updated 4.0 years ago by • 0 • written 4.2 years ago by ▴ 50
0
votes
0
replies
751
views
Comment: C: Split synchronized file
4.2 years ago by taniamahmood38 ▴ 50
1
vote
2
replies
751
views
Split synchronized file
sync file popoolation2 tool ubuntu
4.2 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
2.3k
views
Comment: C: Convert BCF to BAM
4.2 years ago by taniamahmood38 ▴ 50
0
votes
2
replies
2.3k
views
Comment: C: Convert BCF to BAM
updated 4.2 years ago by 161k • written 4.2 years ago by ▴ 50
0
votes
1
reply
2.3k
views
Comment: C: Convert BCF to BAM
4.2 years ago by taniamahmood38 ▴ 50
0
votes
1
reply
2.3k
views
Comment: C: Convert BCF to BAM
4.2 years ago by taniamahmood38 ▴ 50
0
votes
1
reply
2.3k
views
Comment: C: Convert BCF to BAM
4.2 years ago by taniamahmood38 ▴ 50
98 results • Page 2 of 2
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