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comments
0
votes
0
replies
623
views
Comment:
Comment: Which gatk version generates VCF version 4.1
3 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
458
views
Comment:
Comment: Generate VCF version 4.1 using GATK version 4
3 months ago by
taniamahmood38
▴ 30
1
vote
1
reply
623
views
Comment:
Comment: Which gatk version generates VCF version 4.1
3 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
458
views
Comment:
Comment: Generate VCF version 4.1 using GATK version 4
3 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
458
views
Comment:
Comment: HOW CAN I GENERATE VCF VERSION 4.1 USING GATK VERSION 4?
3 months ago by
taniamahmood38
▴ 30
1
vote
6
replies
458
views
Generate VCF version 4.1 using GATK version 4
gatk4.0
vcf4.1
3 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
623
views
Comment:
Comment: Which gatk version generates VCF version 4.1
3 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
623
views
Comment:
Comment: Which gatk version generates VCF version 4.1
3 months ago by
taniamahmood38
▴ 30
3
votes
8
replies
623
views
Which gatk version generates VCF version 4.1
vcf_v4.1
gatk
3 months ago by
taniamahmood38
▴ 30
0
votes
5
replies
588
views
Error: ##fileformat=VCFv4.2 does not exist
Pharmcat
VCF
updated 4 months ago by
sbstevenlee
▴ 480 • written 4 months ago by
taniamahmood38
▴ 30
0
votes
3
replies
653
views
How to unzip a file with .bgz extention
.bgz
unzip
updated 4 months ago by
GenoMax
130k • written 4 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
588
views
Comment:
Comment: Error: ##fileformat=VCFv4.2 does not exist
4 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
597
views
Comment:
Comment: Issue with VCF format while using Pharmcat
4 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
597
views
Comment:
Comment: Issue with VCF format while using Pharmcat
4 months ago by
taniamahmood38
▴ 30
0
votes
7
replies
597
views
Issue with VCF format while using Pharmcat
Pharmcat
VCF
4 months ago by
taniamahmood38
▴ 30
0
votes
2
replies
597
views
Comment:
Comment: Issue with VCF format while using Pharmcat
4 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
759
views
Comment:
Comment: Encountering error while using sudo apt-get update command
6 months ago by
taniamahmood38
▴ 30
1
vote
3
replies
759
views
Encountering error while using sudo apt-get update command
ubuntu
offtopic
updated 6 months ago by
Michael
52k • written 6 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
769
views
Comment:
Comment: How to install latest version of bcftools on ubuntu?
6 months ago by
taniamahmood38
▴ 30
2
votes
2
replies
769
views
How to install latest version of bcftools on ubuntu?
ubuntu
bcftoolsv1.16
updated 6 months ago by
GenoMax
130k • written 6 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
164
views
Pool-HMM formula
Pool-HMM
Python_program
8 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
182
views
Visualization of Pool-HMM results
Pool-HMM
graphs
8 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
426
views
Comment:
Comment: Fastq to Fasta format
8 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
426
views
Comment:
Comment: Fastq to Fasta format
8 months ago by
taniamahmood38
▴ 30
0
votes
4
replies
426
views
Fastq to Fasta format
galaxy
fastq
fasta
8 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
189
views
How to calculate per site transition probability between hidden states.
-kargument
pool-HMM
10 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
189
views
Require DH script
DH
TajimasD
H-statistics
11 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
228
views
Is Tajima's Pi and Wattersons Theta site frequency spectrum statistics?
TajimasD
WattersonsTheta
11 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
240
views
Require combine script of Tajima'sD and Fay and Wu's H stats
H-statistics
TajimasD
12 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
275
views
Require composite script of Hp and ROH statistics
ROH
Pooled-heterozygosity
github
script
12 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
476
views
Comment:
Comment: How to convert VCF into hapmatrix format?
12 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
476
views
Comment:
Comment: How to convert VCF into hapmatrix format?
12 months ago by
taniamahmood38
▴ 30
0
votes
4
replies
476
views
How to convert VCF into hapmatrix format?
popseq
hapmatrix
vcf
12 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
455
views
Comment:
Comment: How to generate bam to vcf containing ancestral allele (AA) information?
12 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
455
views
Comment:
Comment: How to generate bam to vcf containing ancestral allele (AA) information?
12 months ago by
taniamahmood38
▴ 30
1
vote
4
replies
455
views
How to generate bam to vcf containing ancestral allele (AA) information?
ancestral_allele
vcf
bam
updated 12 months ago by
Ram
39k • written 12 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
813
views
Comment:
Comment: How to add the ancestral allele (AA) information in a vcf file?
12 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
302
views
Understanding the output generated using rehh package
sfs
Rehh
12 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
813
views
Comment:
Comment: How to add the ancestral allele (AA) information in a vcf file?
12 months ago by
taniamahmood38
▴ 30
1
vote
4
replies
813
views
How to add the ancestral allele (AA) information in a vcf file?
AA_tag
vcf
12 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
199
views
Issue in computing the site frequency spectrum statistics using Rehh package
Rehh
R
13 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
424
views
Comment:
Comment: Error in mapply(function(x, y)
13 months ago by
taniamahmood38
▴ 30
2
votes
2
replies
424
views
Error in mapply(function(x, y)
rehh
R
13 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
205
views
Convert pileup file to genetic map file
genetic_map
pileup
.map
13 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
529
views
Comment:
Comment: Problem assigning read group to a sample
14 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
529
views
Comment:
Comment: Problem assigning read group to a sample
14 months ago by
taniamahmood38
▴ 30
2
votes
4
replies
529
views
Problem assigning read group to a sample
RG_tag
popbam
bam
pooled-seq
14 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
6.6k
views
Comment:
Comment: samtools addreplacerg gives error
14 months ago by
taniamahmood38
▴ 30
0
votes
1
reply
6.6k
views
Comment:
Comment: samtools addreplacerg gives error
14 months ago by
taniamahmood38
▴ 30
0
votes
0
replies
557
views
Comment:
Comment: popbam: command not found
14 months ago by
taniamahmood38
▴ 30
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