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Comment: Comment: Which gatk version generates VCF version 4.1
3 months ago by taniamahmood38 ▴ 30
0
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0
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458
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Comment: Comment: Generate VCF version 4.1 using GATK version 4
3 months ago by taniamahmood38 ▴ 30
1
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623
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Comment: Comment: Which gatk version generates VCF version 4.1
3 months ago by taniamahmood38 ▴ 30
0
votes
1
reply
458
views
Comment: Comment: Generate VCF version 4.1 using GATK version 4
3 months ago by taniamahmood38 ▴ 30
0
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1
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458
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Comment: Comment: HOW CAN I GENERATE VCF VERSION 4.1 USING GATK VERSION 4?
3 months ago by taniamahmood38 ▴ 30
1
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6
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458
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Generate VCF version 4.1 using GATK version 4
gatk4.0 vcf4.1
3 months ago by taniamahmood38 ▴ 30
0
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1
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623
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Comment: Comment: Which gatk version generates VCF version 4.1
3 months ago by taniamahmood38 ▴ 30
0
votes
1
reply
623
views
Comment: Comment: Which gatk version generates VCF version 4.1
3 months ago by taniamahmood38 ▴ 30
3
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8
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623
views
Which gatk version generates VCF version 4.1
vcf_v4.1 gatk
3 months ago by taniamahmood38 ▴ 30
0
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5
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588
views
Error: ##fileformat=VCFv4.2 does not exist
Pharmcat VCF
updated 4 months ago by ▴ 480 • written 4 months ago by ▴ 30
0
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3
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653
views
How to unzip a file with .bgz extention
.bgz unzip
updated 4 months ago by 130k • written 4 months ago by ▴ 30
0
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0
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588
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Comment: Comment: Error: ##fileformat=VCFv4.2 does not exist
4 months ago by taniamahmood38 ▴ 30
0
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0
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597
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Comment: Comment: Issue with VCF format while using Pharmcat
4 months ago by taniamahmood38 ▴ 30
0
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0
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597
views
Comment: Comment: Issue with VCF format while using Pharmcat
4 months ago by taniamahmood38 ▴ 30
0
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7
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597
views
Issue with VCF format while using Pharmcat
Pharmcat VCF
4 months ago by taniamahmood38 ▴ 30
0
votes
2
replies
597
views
Comment: Comment: Issue with VCF format while using Pharmcat
4 months ago by taniamahmood38 ▴ 30
0
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1
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759
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Comment: Comment: Encountering error while using sudo apt-get update command
6 months ago by taniamahmood38 ▴ 30
1
vote
3
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759
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Encountering error while using sudo apt-get update command
ubuntu offtopic
updated 6 months ago by 52k • written 6 months ago by ▴ 30
0
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0
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769
views
Comment: Comment: How to install latest version of bcftools on ubuntu?
6 months ago by taniamahmood38 ▴ 30
2
votes
2
replies
769
views
How to install latest version of bcftools on ubuntu?
ubuntu bcftoolsv1.16
updated 6 months ago by 130k • written 6 months ago by ▴ 30
0
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0
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164
views
Pool-HMM formula
Pool-HMM Python_program
8 months ago by taniamahmood38 ▴ 30
0
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0
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182
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Visualization of Pool-HMM results
Pool-HMM graphs
8 months ago by taniamahmood38 ▴ 30
0
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0
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426
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Comment: Comment: Fastq to Fasta format
8 months ago by taniamahmood38 ▴ 30
0
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1
reply
426
views
Comment: Comment: Fastq to Fasta format
8 months ago by taniamahmood38 ▴ 30
0
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4
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426
views
Fastq to Fasta format
galaxy fastq fasta
8 months ago by taniamahmood38 ▴ 30
0
votes
0
replies
189
views
How to calculate per site transition probability between hidden states.
-kargument pool-HMM
10 months ago by taniamahmood38 ▴ 30
0
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0
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189
views
Require DH script
DH TajimasD H-statistics
11 months ago by taniamahmood38 ▴ 30
0
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0
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228
views
Is Tajima's Pi and Wattersons Theta site frequency spectrum statistics?
TajimasD WattersonsTheta
11 months ago by taniamahmood38 ▴ 30
0
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0
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240
views
Require combine script of Tajima'sD and Fay and Wu's H stats
H-statistics TajimasD
12 months ago by taniamahmood38 ▴ 30
0
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0
replies
275
views
Require composite script of Hp and ROH statistics
ROH Pooled-heterozygosity github script
12 months ago by taniamahmood38 ▴ 30
0
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0
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476
views
Comment: Comment: How to convert VCF into hapmatrix format?
12 months ago by taniamahmood38 ▴ 30
0
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1
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476
views
Comment: Comment: How to convert VCF into hapmatrix format?
12 months ago by taniamahmood38 ▴ 30
0
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4
replies
476
views
How to convert VCF into hapmatrix format?
popseq hapmatrix vcf
12 months ago by taniamahmood38 ▴ 30
0
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0
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455
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
12 months ago by taniamahmood38 ▴ 30
0
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1
reply
455
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
12 months ago by taniamahmood38 ▴ 30
1
vote
4
replies
455
views
How to generate bam to vcf containing ancestral allele (AA) information?
ancestral_allele vcf bam
updated 12 months ago by 39k • written 12 months ago by ▴ 30
0
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0
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813
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
12 months ago by taniamahmood38 ▴ 30
0
votes
0
replies
302
views
Understanding the output generated using rehh package
sfs Rehh
12 months ago by taniamahmood38 ▴ 30
0
votes
1
reply
813
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
12 months ago by taniamahmood38 ▴ 30
1
vote
4
replies
813
views
How to add the ancestral allele (AA) information in a vcf file?
AA_tag vcf
12 months ago by taniamahmood38 ▴ 30
0
votes
0
replies
199
views
Issue in computing the site frequency spectrum statistics using Rehh package
Rehh R
13 months ago by taniamahmood38 ▴ 30
0
votes
0
replies
424
views
Comment: Comment: Error in mapply(function(x, y)
13 months ago by taniamahmood38 ▴ 30
2
votes
2
replies
424
views
Error in mapply(function(x, y)
rehh R
13 months ago by taniamahmood38 ▴ 30
0
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0
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205
views
Convert pileup file to genetic map file
genetic_map pileup .map
13 months ago by taniamahmood38 ▴ 30
0
votes
0
replies
529
views
Comment: Comment: Problem assigning read group to a sample
14 months ago by taniamahmood38 ▴ 30
0
votes
1
reply
529
views
Comment: Comment: Problem assigning read group to a sample
14 months ago by taniamahmood38 ▴ 30
2
votes
4
replies
529
views
Problem assigning read group to a sample
RG_tag popbam bam pooled-seq
14 months ago by taniamahmood38 ▴ 30
0
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0
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6.6k
views
Comment: Comment: samtools addreplacerg gives error
14 months ago by taniamahmood38 ▴ 30
0
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1
reply
6.6k
views
Comment: Comment: samtools addreplacerg gives error
14 months ago by taniamahmood38 ▴ 30
0
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0
replies
557
views
Comment: Comment: popbam: command not found
14 months ago by taniamahmood38 ▴ 30
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