Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
1
reply
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
1
reply
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
1
reply
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
2
replies
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
1
reply
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
1
reply
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
0
replies
6.7k
views
Comment: Comment: Extract reads from BAM file with known variant
3.3 years ago by pablo ▴ 350
0
votes
0
replies
2.4k
views
Comment: Comment: Find barcodes in fasta file
3.4 years ago by pablo ▴ 350
0
votes
1
reply
2.4k
views
Comment: Comment: Find barcodes in fasta file
3.4 years ago by pablo ▴ 350
3
votes
7
replies
2.4k
views
Find barcodes in fasta file
fasta biopython
3.4 years ago by pablo ▴ 350
0
votes
1
reply
2.4k
views
Comment: Comment: Find barcodes in fasta file
3.4 years ago by pablo ▴ 350
0
votes
0
replies
1.8k
views
Comment: Comment: Method to fill N gaps with de novo assembly
3.4 years ago by pablo ▴ 350
0
votes
0
replies
1.8k
views
Comment: Comment: Method to fill N gaps with de novo assembly
3.5 years ago by pablo ▴ 350
0
votes
0
replies
1.8k
views
Comment: Comment: Method to fill N gaps with de novo assembly
3.5 years ago by pablo ▴ 350
0
votes
6
replies
1.8k
views
Method to fill N gaps with de novo assembly
assembly
3.4 years ago by pablo ▴ 350
0
votes
0
replies
549
views
Best practice to find break point in fusion genes
fusiongenes isoseq breakpoint pacbio rnaseq
3.7 years ago by pablo ▴ 350
0
votes
1
reply
1.4k
views
Comment: Comment: Splicing window on fasta sequence
3.8 years ago by pablo ▴ 350
3
votes
4
replies
1.4k
views
Splicing window on fasta sequence
biopython python
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 350
0
votes
1
reply
835
views
Check if a nucleotide matches in CDS (from GenBank)
Genbank
updated 4.0 years ago by 16k • written 4.0 years ago by ▴ 350
0
votes
0
replies
1.6k
views
Annotation with eggNOG-mapper
prodigal annotation prokaryote eggNOG-mapper
4.0 years ago by pablo ▴ 350
0
votes
1
reply
2.7k
views
Running RepeatMasker with RepeatModeler database
repeatmasker repeatmodeler
updated 4.0 years ago by 9.3k • written 4.0 years ago by ▴ 350
1
vote
1
reply
3.3k
views
k-mer distribution to estimate the heterozygosity of my assembly
kmer Assembly pacbio purge_dups
updated 4.5 years ago by ▴ 230 • written 4.9 years ago by ▴ 350
0
votes
0
replies
1.7k
views
Comment: Comment: Blast Output with only one line
4.5 years ago by pablo ▴ 350
1
vote
4
replies
1.7k
views
Blast Output with only one line
blast
4.5 years ago by pablo ▴ 350
0
votes
2
replies
2.0k
views
Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
4.8 years ago by pablo ▴ 350
0
votes
1
reply
2.0k
views
Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
4.8 years ago by pablo ▴ 350
3
votes
5
replies
2.0k
views
Running purge_dups on a hybrid assembly (optical mapping + reads)
pacbio purge_dups Assembly bionano
updated 2.2 years ago by 8.1k • written 4.8 years ago by ▴ 350
0
votes
1
reply
1.8k
views
Answer: A: De novo alignement with smrttools
4.8 years ago by pablo ▴ 350
1
vote
5
replies
1.8k
views
De novo alignement with smrttools
denovo alignment smrttools
4.8 years ago by pablo ▴ 350
0
votes
1
reply
1.9k
views
Comment: C: How to determine coverage cutoffs in k-mer distribution
4.9 years ago by pablo ▴ 350
5
votes
3
replies
1.9k
views
How to determine coverage cutoffs in k-mer distribution
kmer distribution kmer Assembly
updated 4.9 years ago by ★ 30k • written 4.9 years ago by ▴ 350
0
votes
0
replies
2.1k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
5.0 years ago by pablo ▴ 350
1
vote
0
replies
2.1k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
5.0 years ago by pablo ▴ 350
1
vote
9
replies
2.1k
views
Difference of transcripts between my GFF file and the IGV results
gff igv transcripts
5.0 years ago by pablo ▴ 350
0
votes
1
reply
2.1k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
5.0 years ago by pablo ▴ 350
0
votes
1
reply
2.1k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
5.0 years ago by pablo ▴ 350
0
votes
1
reply
1.1k
views
Transcript sequence aligns twice on the reference
alignement bam
updated 5.0 years ago by 13k • written 5.0 years ago by ▴ 350
0
votes
0
replies
2.6k
views
Comment: C: Problem with vcf format to run gatk FastaAlternateReferenceMaker
5.0 years ago by pablo ▴ 350
0
votes
3
replies
2.6k
views
Problem with vcf format to run gatk FastaAlternateReferenceMaker
vcf gatk phasing
5.0 years ago by pablo ▴ 350
1
vote
1
reply
1.4k
views
Interpreting results of a dotplot
dotplot dgenies
5.2 years ago by pablo ▴ 350
0
votes
1
reply
5.7k
views
Comment: C: Using HiCanu assembler on PacBio Hifi reads
5.2 years ago by pablo ▴ 350
0
votes
7
replies
5.7k
views
Using HiCanu assembler on PacBio Hifi reads
hicanu pacbio ccs
5.2 years ago by pablo ▴ 350
0
votes
0
replies
5.7k
views
Comment: C: Using HiCanu assembler on PacBio Hifi reads
5.2 years ago by pablo ▴ 350
0
votes
2
replies
1.2k
views
Different number of sequences on the same file between two tools
sequencing counts genometools pacbio bam
updated 5.2 years ago by 20 • written 5.3 years ago by ▴ 350
0
votes
0
replies
1.5k
views
Comment: C: Improving PacBio Assembly with Illumina reads
5.2 years ago by pablo ▴ 350
0
votes
2
replies
1.5k
views
Improving PacBio Assembly with Illumina reads
Assembly pacbio illumina
5.2 years ago by pablo ▴ 350
0
votes
0
replies
2.0k
views
Comment: C: Get statistics about an alignment done by Hifiasm
5.3 years ago by pablo ▴ 350
0
votes
3
replies
2.0k
views
Get statistics about an alignment done by Hifiasm
hifiasm alignment
5.3 years ago by pablo ▴ 350
0
votes
1
reply
3.9k
views
Comment: C: Fastq files with only " ! " score
5.3 years ago by pablo ▴ 350
221 results • Page 2 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6