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replies
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Tutorial: Gene Set Enrichment Analysis
microarray enrichment RNA-Seq GSEA
updated 18 months ago by • 0 • written 5.0 years ago by 3.3k
1
vote
0
replies
1.1k
views
Answer: Answer: naming the UMAP cluster
19 months ago by Hamid Ghaedi 3.3k
1
vote
1
reply
22k
views
Comment: Comment: Methylation Analysis Tutorial in R - Part 1
20 months ago by Hamid Ghaedi 3.3k
47
votes
14
replies
22k
views
14 follow
Tutorial: Methylation Analysis Tutorial in R - Part 1
R cancer methylation
updated 4 months ago by ▴ 20 • written 5.1 years ago by 3.3k
16
votes
3
replies
5.9k
views
Tutorial: Methylation Analysis Tutorial in R_part2
cancer methylation RNA-Seq R
updated 4.6 years ago by • 0 • written 5.1 years ago by 3.3k
0
votes
0
replies
22k
views
Comment: Comment: Methylation Analysis Tutorial in R_part1
22 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
2.7k
views
Comment: Comment: GEO dataset extraction
2.1 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
3.1k
views
Comment: Comment: How to convert Seurat object to sce object retaining the HVG
2.2 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.3k
views
Comment: Comment: RNAseq gene clustering. Silhouette results generation from the NMF consensus mem
2.2 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
8.4k
views
Comment: Comment: Unsupervised clustering on gene expression data
2.2 years ago by Hamid Ghaedi 3.3k
10
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4
replies
8.4k
views
Tutorial: Unsupervised clustering on gene expression data
gene-expression clustering RNA-seq
2.2 years ago by Hamid Ghaedi 3.3k
1
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0
replies
2.8k
views
Answer: Answer: How to filter gene counts by keeps genes that have a gene count of of 10 or more
2.3 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.3k
views
Answer: Answer: Seurat clustering and classification
2.3 years ago by Hamid Ghaedi 3.3k
1
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1
reply
2.4k
views
Answer: Answer: interpreting results from pathway analysis
2.3 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
1.3k
views
Answer: Answer: TXT or IDAT format for differential DNA Methylation analysis
2.3 years ago by Hamid Ghaedi 3.3k
4
votes
0
replies
1.5k
views
Answer: Answer: scRNAseq error source a custom function
2.3 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.5k
views
Comment: Comment: Where to get the molecular subtype information of STAD sample in TCGA
2.4 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
2.1k
views
Answer: Answer: integrate single cell RNA sequencing data
2.4 years ago by Hamid Ghaedi 3.3k
2
votes
0
replies
871
views
Comment: Comment: 'Seurat' package
2.5 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
2.2k
views
Comment: Comment: Change a dataset of variants into binary form?
2.8 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.2k
views
Comment: Comment: Genes With List of Go terms
2.8 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
2.2k
views
Answer: Answer: Change a dataset of variants into binary form?
2.8 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
1.0k
views
Comment: Comment: Which software should I use to perform Gene Enrichment Analysis for miRNA target
2.9 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.6k
views
Answer: Answer: Advice needed on survival analysis using TCGA
2.9 years ago by Hamid Ghaedi 3.3k
3
votes
1
reply
3.5k
views
Answer: Answer: UniProt ID, genes
2.9 years ago by Hamid Ghaedi 3.3k
1
vote
1
reply
1.7k
views
Comment: Comment: Survival analysis based on gene signature
2.9 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
913
views
Comment: Comment: Does a TCGA dataset need batch effect removal?
3.0 years ago by Hamid Ghaedi 3.3k
2
votes
1
reply
1.6k
views
Comment: Comment: Creating Seurat Object from DropViz metacells and annotations?
3.0 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
5.8k
views
Comment: Comment: need some help on how to use DESeq2 for TCGA data
3.0 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
5.8k
views
Comment: Comment: need some help on how to use DESeq2 for TCGA data
3.0 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
8.4k
views
Comment: Comment: Unsupervised clustering on gene expression data
3.1 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
876
views
Comment: Comment: How to interate over folder and use as input for program running in Rstudio.
3.2 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.1k
views
Comment: Comment: Best way to make a PCA plot integrating in-house data with public data?
3.2 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.6k
views
Comment: Comment: How to separate combined values?
3.2 years ago by Hamid Ghaedi 3.3k
1
vote
1
reply
1.7k
views
Answer: Answer: Picking up differences in mutation sets
3.2 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
5.2k
views
Comment: Comment: Where can I find the reference files for the 1000 Genome project VCF data?
3.2 years ago by Hamid Ghaedi 3.3k
2
votes
1
reply
22k
views
Comment: Comment: Methylation Analysis Tutorial in R_part1
2.9 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.5k
views
Comment: Comment: Suggestion of Cancer Databases
3.4 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
2.2k
views
Comment: Comment: PATHWAY ENRICHMENT
3.4 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.1k
views
Comment: Comment: DMD gene/genome/exome sequencing data publicly avalaible
3.4 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.5k
views
Comment: Comment: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data a
3.4 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.5k
views
Comment: Comment: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data a
3.4 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
3.1k
views
Comment: Comment: Getting access to files deposited to European Genome-phenome Archive (EGA)
3.4 years ago by Hamid Ghaedi 3.3k
1
vote
3
replies
3.1k
views
Getting access to files deposited to European Genome-phenome Archive (EGA)
EGA EBI
3.4 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
3.1k
views
Answer: Answer: Getting access to files deposited to European Genome-phenome Archive (EGA)
3.4 years ago by Hamid Ghaedi 3.3k
2
votes
1
reply
1.4k
views
Comment: Comment: RT-PCR primer design
3.4 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.9k
views
Comment: Comment: SRR sample ID
3.4 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.9k
views
Comment: Comment: SRR sample ID
3.4 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
2.6k
views
Comment: Comment: Correlating DNA methylation beta values with Gene expression levels (RNA-seq)
3.5 years ago by Hamid Ghaedi 3.3k
2
votes
0
replies
3.0k
views
Answer: Answer: For loop in R
3.5 years ago by Hamid Ghaedi 3.3k
233 results • Page 1 of 5
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